Re: [deal.II] Re: run deal.ii on stampede

2017-04-10 Thread zhen-lin Wang
Hi Artur, It is the problem, I finally set up deal.ii with trilinos and petsc. Thank you for all your help. Bests, Zhenlin 2017-04-07 17:44 GMT-04:00 Artur Safin : > Zhenlin, > > The petsc configuration I posted was for complex numbers, which is enabled > with --with-scalar-type=complex. If you

Re: [deal.II] Re: run deal.ii on stampede

2017-04-07 Thread Artur Safin
Zhenlin, The petsc configuration I posted was for complex numbers, which is enabled with --with-scalar-type=complex. If you have not removed this option, then it makes sense that you get the error - the data_out classes do not yet support complex numbers (https://github.com/dealii/dealii/issues

Re: [deal.II] Re: run deal.ii on stampede

2017-04-06 Thread zhen-lin Wang
Hi Artur, Thank you very much for your sharing! it is very helpful. I basically followed your installation, and it works well for trilinos and petsc. However when I install deal.ii with link to petsc, error happens when compiling data_out_dof_data.cc that "error: no suitable conversion function fr

[deal.II] Re: run deal.ii on stampede

2017-04-06 Thread Artur Safin
Zhenlin, Before installation, I had loaded modules intel/15.0.2 and cxx11, and was using mvapich2/2.1. For Trilinos, here is the cmake command: cmake \ -D Trilinos_ENABLE_CXX11=ON \ -D Trilinos_ENABLE_Sacado=ON \ -D Trilinos_ENABLE_MueLu:BOOL=ON \ -D Trilinos_ENABLE_Stratimikos=ON \ -D CMAKE_BU

[deal.II] Re: run deal.ii on stampede

2017-04-05 Thread zhen-lin Wang
Hi Artur, I am trying to install these by myself, it would be great that you can share your installation steps, did you configure deal.ii with petsc? If so did you use the available version or also install it by yourself? Thank you, Zhenlin 在 2017年4月5日星期三 UTC-4下午7:56:52,Artur Safin写道: > > Zhen

[deal.II] Re: run deal.ii on stampede

2017-04-05 Thread zhen-lin Wang
Hi Bruno, To load trilinos/12.8.1 I have to load gcc which is against intel/15.0.2 that is necessary to load dealii. I load the python module, but the error is still there, probably I will try to install trilinos and deal.ii bymyself. Thanks, Zhenlin 在 2017年4月5日星期三 UTC-4下午7:34:35,Bruno Turcks

[deal.II] Re: run deal.ii on stampede

2017-04-05 Thread Artur Safin
Zhenlin, I remember having trouble getting deal2 to compile against the available versions of trilinos. In the end, I just ended up installing both myself. If you want, I can post my installation steps. Rgds, Artur -- The deal.II project is located at http://www.dealii.org/ For mailing list/

[deal.II] Re: run deal.ii on stampede

2017-04-05 Thread Bruno Turcksin
Zhenlin, On Wednesday, April 5, 2017 at 6:10:44 PM UTC-4, zhen-lin Wang wrote: > > However, errors happens at linking: > > /home1/apps/intel15/mvapich2_2_1/trilinos/12.8.1/lib/libpytrilinos.so: > undefined reference to `PyType_IsSubtype' > > /home1/apps/intel15/mvapich2_2_1/trilinos/12.8.1/lib/li