.cfg#L68)? This should
> change the name from blas to whatever is the name for mkl.
>
> Best,
>
> Bruno
>
> On Thursday, July 6, 2017 at 9:28:22 AM UTC-4, Phil H wrote:
>>
>> Hello I'm using candi to install deal.ii on a brand new cluster.
>>
>>
Hello I'm using candi to install deal.ii on a brand new cluster.
The new cluster is geared up to use intel, but I can try and use gcc. The
modules I load to begin with are:
1) nixpkgs/.16.09 (H,*S*) 3) gcccore/.5.4.0 (H) 5) openmpi/2.1.1 (
*m*)
2) StdEnv/2016.4 (*S*) 4) gcc/5.4
Hello there,
I'm currently building dealii via candi on a brand new cluster and I am
facing a few issues.
First, this is what I am compiling with
1) nixpkgs/.16.093) gcccore/.5.4.05) openmpi/2.1.1
2) StdEnv/2016.4 4) gcc/5.4.0 6) imkl/11.3.4.258
GNU bash, ver
el_lp64.so:
error: undefined reference to 'readlink'
/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64/libmkl_core.so:
error: undefined reference to 'strtok_r'
/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.25
" in your shell.
> Can you try to do the following:
> $ unset BASH_FUNC_ml()
> $ ./candi.sh
>
> and report if the error is still there?
>
>
> On Tuesday, June 27, 2017 at 10:58:45 AM UTC+2, Phil H wrote:
>>
>> Hi there,
>>
>> I'm installing dealii
Hi Uwe,
Thanks for the advice - this seems to be cleared by just unsetting the bash
functions ml and module.
unset -f ml
unset -f module
This allowed the build to continue. I don't know what else lies in wait for
the build, but I will keep you all posted. Thanks again, Uwe.
Phil
On Tues
Hi there,
I'm installing dealii (then aspect) using candi on a brand new cluster and
I have an error I have never seen before.
*Building hdf5 1.10.1*
./candi_configure: line 6: syntax error near unexpected token `('
./candi_configure: line 6: `declare -x BASH_FUNC_ml()'
Has anyone seen this
urn PETSC off.
For aspect -
cmake -DDEAL_II_DIR=/.../deal.ii-candi/deal.II-v8.4.2
-DASPECT_USE_FP_EXCEPTIONS=OFF ..
The FP EXCEPTIONS was required for the aspect exectuable to pass any tests.
I was working on Ubuntu 14.04
On Tuesday, February 28, 2017 at 11:36:53 AM UTC-5, Phil H wrote:
>
Hi Uwe,
I obtained an aspect executable, but it failed the tests. I'm going to see
where the issue lies and will get back to you.
Phil
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
---
You rece
Hi all,
Looks promising now - the version of gcc did not have a gfortran lib
installed. During the manual build I had to get a higher version of gcc
available from apt-get on ubuntu 14.04. This then caused a number of
problems further down the line.
Candi looks like an excellent package. Tha
-lgfortran
collect2: error: ld returned 1 exit status
make[1]: *** [cmTC_96781] Error 1
Will explore further.
On Friday, March 3, 2017 at 2:32:23 PM UTC, Phil H wrote:
>
> Hi Uwe,
>
> Thanks for the suggestion of Candi. At the moment, there is still an issue
> which I think
IR variable.
>
> I've checked with the current version (v8.4.2), the installation of aspect
> should be as
> easy as: cmake . , make
>
> Best
> Uwe
>
> On Tuesday, February 28, 2017 at 5:36:53 PM UTC+1, Phil H wrote:
>>
>> Hello there,
>>
>> I&#x
Great, thanks! I have started Candi now - thanks to yourself and Uwe.
On Wednesday, March 1, 2017 at 1:11:30 PM UTC, Wolfgang Bangerth wrote:
>
> On 03/01/2017 06:09 AM, Phil H wrote:
> >
> > Hmmm. So Trilinos may be the issue. Would that explain why LAPACK is set
> to
2 dgl 112883 Mar 1 12:34 CMakeCache.txt
Hmmm. So Trilinos may be the issue. Would that explain why LAPACK is set to
OFF as well? Do I have to specifically ask for LAPACK to be turned on?
On Wednesday, March 1, 2017 at 12:56:55 PM UTC, Wolfgang Bangerth wrote:
>
> On 03/01/2017 05:38
Hi Wolfgang,
Here is the full compilation, with the cmake. As I say, I can't see
immediately where the issue is.
CC=mpicc CXX=mpicxx CFLAGS="-fPIC -O2" cmake
-DCMAKE_INSTALL_PREFIX=/local/earthsci/klmz32/Documents/LAB/dealii
-DDEAL_II_WITH_TRILINOS=ON
-DTRILINOS_DIR=/local/earthsci/klmz32
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