Hi Wolfgang,
Here is the full compilation, with the cmake. As I say, I can't see
immediately where the issue is.
CC=mpicc CXX=mpicxx CFLAGS="-fPIC -O2" cmake
-DCMAKE_INSTALL_PREFIX=/local/earthsci/klmz32/Documents/LAB/dealii
-DDEAL_II_WITH_TRILINOS=ON
-DTRILINOS_DIR=/local/earthsci/klmz32/Documents/LAB/trilinos
-DP4EST_DIR=/local/earthsci/klmz32/Documents/LAB/sources/p4est
-DDEAL_II_WITH_P4EST=ON -DDEAL_II_WITH_MPI=ON -DDEAL_II_WITH_HDF5=ON
-DHDF5_DIR=/local/earthsci/klmz32/Documents/LAB/sources/hdf5-1.10.0-patch1
..
-- This is CMake 3.4.1
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_external_macros.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_register_feature.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_enable_if_links.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_add_test.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_to_string.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_item_matches.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_replace_flag.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_enable_language_optional.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_package_handle.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_purge_feature.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_clear_cmake_required.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_insource_setup_target.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_find_package.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_add_library.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_setup_target.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_add_dependencies.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_find_path.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_reset_cmake_required.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_invoke_autopilot.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_enable_if_supported.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_check_mpi_interface.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_query_git_information.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_switch_library_preference.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_pickup_tests.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_push_cmake_required.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_filter_system_libraries.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_set_if_empty.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_add_definitions.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_check_cxx_compiler_bug.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_find_system_library.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_find_library.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_remove_duplicates.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_to_string_and_add_prefix.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_initialize_cached_variables.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_deal_ii_find_file.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_expand_instantiations.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_configure_feature.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_strip_flag.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_verbose_include.cmake
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/macros/macro_add_flags.cmake
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_cached_variables.cmake
-- The CXX compiler identification is GNU 4.8.5
-- The C compiler identification is GNU 4.9.4
-- Check for working CXX compiler: /usr/bin/mpicxx
-- Check for working CXX compiler: /usr/bin/mpicxx -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/mpicc
-- Check for working C compiler: /usr/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- The Fortran compiler identification is GNU 4.8.5
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_deal_ii.cmake
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_compiler_flags.cmake
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_compiler_flags_gnu.cmake
-- Performing Test DEAL_II_HAVE_FLAG_pedantic
-- Performing Test DEAL_II_HAVE_FLAG_pedantic - Success
-- Performing Test DEAL_II_HAVE_FLAG_fpic
-- Performing Test DEAL_II_HAVE_FLAG_fpic - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed
-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wall
-- Performing Test DEAL_II_HAVE_FLAG_Wall - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wextra
-- Performing Test DEAL_II_HAVE_FLAG_Wextra - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith
-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings
-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wsynth
-- Performing Test DEAL_II_HAVE_FLAG_Wsynth - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare
-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wswitch
-- Performing Test DEAL_II_HAVE_FLAG_Wswitch - Success
-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual
-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wlong_long
-- Performing Test DEAL_II_HAVE_FLAG_Wlong_long - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations
-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix
-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix - Success
-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops
-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops - Success
-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops
-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops - Success
-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing
-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing - Success
-- Performing Test DEAL_II_HAVE_FLAG_Og
-- Performing Test DEAL_II_HAVE_FLAG_Og - Success
-- Performing Test DEAL_II_HAVE_FLAG_ggdb
-- Performing Test DEAL_II_HAVE_FLAG_ggdb - Success
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/bundled/setup_bundled.cmake
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/checks/check_01_compiler_features.cmake
-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS
-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS - Success
-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK
-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK - Success
-- Test successful, do not define DEAL_II_VECTOR_ITERATOR_IS_POINTER
-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT
-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT - Success
-- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE
-- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE - Success
-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE
-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE - Success
-- Performing Test DEAL_II_HAVE_FLAG_rdynamic
-- Performing Test DEAL_II_HAVE_FLAG_rdynamic - Success
-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER
-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections
-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE - Success
-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA
-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA - Success
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD - Success
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/checks/check_01_cpu_features.cmake
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Performing Test DEAL_II_HAVE_SSE2
-- Performing Test DEAL_II_HAVE_SSE2 - Success
-- Performing Test DEAL_II_HAVE_AVX
-- Performing Test DEAL_II_HAVE_AVX - Failed
-- Performing Test DEAL_II_HAVE_AVX512
-- Performing Test DEAL_II_HAVE_AVX512 - Failed
-- Performing Test DEAL_II_HAVE_OPENMP_SIMD
-- Performing Test DEAL_II_HAVE_OPENMP_SIMD - Failed
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/checks/check_01_cxx_features.cmake
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx14
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx14 - Failed
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx1y
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx1y - Success
-- Using C++ version flag "-std=c++1y"
-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE
-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE - Failed
-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK
-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK - Failed
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx11
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx11 - Success
-- Using C++ version flag "-std=c++11"
-- Performing Test DEAL_II_HAVE_CXX11_ARRAY
-- Performing Test DEAL_II_HAVE_CXX11_ARRAY - Success
-- Performing Test DEAL_II_HAVE_CXX11_CONDITION_VARIABLE
-- Performing Test DEAL_II_HAVE_CXX11_CONDITION_VARIABLE - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_GCCBUG35569_OK
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_GCCBUG35569_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_SHARED_PTR
-- Performing Test DEAL_II_HAVE_CXX11_SHARED_PTR - Success
-- Performing Test DEAL_II_HAVE_CXX11_THREAD
-- Performing Test DEAL_II_HAVE_CXX11_THREAD - Success
-- Performing Test DEAL_II_HAVE_CXX11_MUTEX
-- Performing Test DEAL_II_HAVE_CXX11_MUTEX - Success
-- Performing Test DEAL_II_HAVE_CXX11_TUPLE
-- Performing Test DEAL_II_HAVE_CXX11_TUPLE - Success
-- Performing Test DEAL_II_HAVE_CXX11_TYPE_TRAITS
-- Performing Test DEAL_II_HAVE_CXX11_TYPE_TRAITS - Success
-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK - Success
-- DEAL_II_WITH_CXX11 successfully set up
-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE
-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE - Failed
-- Performing Test DEAL_II_HAVE_STD_ISNAN
-- Performing Test DEAL_II_HAVE_STD_ISNAN - Success
-- Performing Test DEAL_II_HAVE_ISNAN
-- Performing Test DEAL_II_HAVE_ISNAN - Success
-- Performing Test DEAL_II_HAVE_UNDERSCORE_ISNAN
-- Performing Test DEAL_II_HAVE_UNDERSCORE_ISNAN - Failed
-- Performing Test DEAL_II_HAVE_ISFINITE
-- Performing Test DEAL_II_HAVE_ISFINITE - Success
-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS
-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS - Success
-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS
-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS - Failed
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/checks/check_02_system_features.cmake
-- Looking for C++ include sys/resource.h
-- Looking for C++ include sys/resource.h - found
-- Looking for C++ include sys/time.h
-- Looking for C++ include sys/time.h - found
-- Looking for C++ include sys/times.h
-- Looking for C++ include sys/times.h - found
-- Looking for times
-- Looking for times - found
-- Looking for C++ include sys/types.h
-- Looking for C++ include sys/types.h - found
-- Looking for C++ include unistd.h
-- Looking for C++ include unistd.h - found
-- Looking for gethostname
-- Looking for gethostname - found
-- Looking for getpid
-- Looking for getpid - found
-- Performing Test m_LIBRARY
-- Performing Test m_LIBRARY - Success
-- Looking for jn
-- Looking for jn - found
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/checks/check_03_compiler_bugs.cmake
-- Performing Test DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG_OK
-- Performing Test DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG_OK - Success
-- Test successful, do not define DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG
-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK
-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK - Success
-- Test successful, do not define DEAL_II_TEMPL_SPEC_FRIEND_BUG
-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK
-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK - Success
-- Test successful, do not define DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG
-- Performing Test DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG_OK
-- Performing Test DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG_OK - Success
-- Test successful, do not define DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG
-- Performing Test DEAL_II_EXPLICIT_CONSTRUCTOR_BUG
-- Performing Test DEAL_II_EXPLICIT_CONSTRUCTOR_BUG - Failed
-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK
-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK - Success
-- Test successful, do not define DEAL_II_CONST_MEMBER_DEDUCTION_BUG
-- Performing Test DEAL_II_TYPE_QUALIFIER_BUG_OK
-- Performing Test DEAL_II_TYPE_QUALIFIER_BUG_OK - Success
-- Test successful, do not define DEAL_II_TYPE_QUALIFIER_BUG
-- Performing Test DEAL_II_BOOST_BIND_COMPILER_BUG_OK
-- Performing Test DEAL_II_BOOST_BIND_COMPILER_BUG_OK - Success
-- Test successful, do not define DEAL_II_BOOST_BIND_COMPILER_BUG
-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK
-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK - Success
-- Test successful, do not define DEAL_II_BIND_NO_CONST_OP_PARENTHESES
-- Performing Test DEAL_II_ICC_SFINAE_BUG_OK
-- Performing Test DEAL_II_ICC_SFINAE_BUG_OK - Success
-- Test successful, do not define DEAL_II_ICC_SFINAE_BUG
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/checks/check_03_generator_bugs.cmake
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_1_bzip2.cmake
-- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- BZIP2_VERSION: 1.0.6
-- BZIP2_LIBRARIES: /usr/lib/x86_64-linux-gnu/libbz2.so
-- BZIP2_INCLUDE_DIRS: /usr/include
-- Found BZIP2
-- DEAL_II_WITH_BZIP2 successfully set up with external dependencies.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_1_lapack.cmake
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Performing Test gfortran_LIBRARY
-- Performing Test gfortran_LIBRARY - Success
-- Performing Test quadmath_LIBRARY
-- Performing Test quadmath_LIBRARY - Success
-- Performing Test c_LIBRARY
-- Performing Test c_LIBRARY - Success
-- LAPACK_LIBRARIES:
/usr/lib/liblapack.so;/usr/lib/libblas.so;/usr/lib/libblas.so;gfortran;m;quadmath;m;c
-- LAPACK_LINKER_FLAGS:
-- Found LAPACK
-- Performing Test DEAL_II_HAVE_FLAG_pthread
-- Performing Test DEAL_II_HAVE_FLAG_pthread - Success
-- Performing Test LAPACK_SYMBOL_CHECK
-- Performing Test LAPACK_SYMBOL_CHECK - Failed
-- Could not find a sufficient BLAS/LAPACK installation: BLAS/LAPACK symbol
check failed! Consult CMakeFiles/CMakeError.log for further information.
-- DEAL_II_WITH_LAPACK has unmet external dependencies.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_1_mpi.cmake
-- Found MPI_C:
/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
-- Found MPI_CXX:
/usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
-- Unable to determine MPI from MPI driver /usr/bin/gfortran
-- Could NOT find MPI_Fortran (missing: MPI_Fortran_LIBRARIES
MPI_Fortran_INCLUDE_PATH)
-- Performing Test MPI_HAVE_MPI_SEEK_SET
-- Performing Test MPI_HAVE_MPI_SEEK_SET - Success
-- Found MPI_MPI_H
-- MPI_VERSION: 2.1
-- MPI_LIBRARIES:
/usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
-- MPI_INCLUDE_DIRS:
/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi
-- MPI_USER_INCLUDE_DIRS:
/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi
-- MPI_CXX_FLAGS:
-- MPI_LINKER_FLAGS:
-- Found MPI
-- DEAL_II_WITH_MPI successfully set up with external dependencies.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_1_threads.cmake
-- TBB_LIBRARY not found! Call:
-- FIND_LIBRARY(TBB_LIBRARY NAMES tbb HINTS PATH_SUFFIXES lib lib64 lib)
-- TBB_DEBUG_LIBRARY not found! Call:
-- FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES
lib lib64 lib)
-- TBB_INCLUDE_DIR not found! Call:
-- FIND_PATH(TBB_INCLUDE_DIR tbb/tbb_stddef.h HINTS PATH_SUFFIXES
include include/tbb tbb)
-- TBB_LIBRARIES: *** Required variable "TBB_LIBRARY" set to NOTFOUND ***
-- TBB_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to
NOTFOUND ***
-- TBB_USER_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to
NOTFOUND ***
-- Could NOT find TBB
-- DEAL_II_WITH_THREADS has unmet external dependencies.
-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS
-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wparentheses
-- Performing Test DEAL_II_HAVE_FLAG_Wparentheses - Success
-- DEAL_II_WITH_THREADS successfully set up with bundled packages.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_1_zlib.cmake
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8")
-- ZLIB_VERSION: 1.2.8
-- ZLIB_LIBRARIES: /usr/lib/x86_64-linux-gnu/libz.so
-- ZLIB_INCLUDE_DIRS: /usr/include
-- Found ZLIB
-- DEAL_II_WITH_ZLIB successfully set up with external dependencies.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_2_metis.cmake
-- METIS_LIBRARY not found! Call:
-- FIND_LIBRARY(METIS_LIBRARY NAMES metis HINTS PATH_SUFFIXES lib lib64
lib build/Linux-x86_64/libmetis)
-- PARMETIS_LIBRARY not found! Call:
-- FIND_LIBRARY(PARMETIS_LIBRARY NAMES parmetis HINTS NO_DEFAULT_PATH
NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH
NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
-- METIS_INCLUDE_DIR not found! Call:
-- FIND_PATH(METIS_INCLUDE_DIR metis.h HINTS PATH_SUFFIXES metis
include/metis include)
-- METIS_LIBRARIES: *** Required variable "METIS_LIBRARY" set to NOTFOUND
***
-- METIS_INCLUDE_DIRS: *** Required variable "METIS_INCLUDE_DIR" set to
NOTFOUND ***
-- METIS_USER_INCLUDE_DIRS: *** Required variable "METIS_INCLUDE_DIR" set
to NOTFOUND ***
-- Could NOT find METIS
-- DEAL_II_WITH_METIS has unmet external dependencies.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_2_trilinos.cmake
CMake Error at
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/STK/STKConfig.cmake:144
(INCLUDE):
include could not find load file:
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/STK/../STKDoc_tests/STKDoc_testsConfig.cmake
Call Stack (most recent call first):
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/TrilinosCouplings/TrilinosCouplingsConfig.cmake:146
(INCLUDE)
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/Trilinos/TrilinosConfig.cmake:146
(INCLUDE)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/modules/FindTRILINOS.cmake:40 (FIND_PACKAGE)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/configure/configure_2_trilinos.cmake:22 (FIND_PACKAGE)
build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1
(FEATURE_TRILINOS_FIND_EXTERNAL)
cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
cmake/configure/configure_2_trilinos.cmake:220 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:119 (VERBOSE_INCLUDE)
CMake Error at
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/TrilinosCouplings/TrilinosCouplingsConfig.cmake:148
(INCLUDE):
include could not find load file:
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/TrilinosCouplings/../STKDoc_tests/STKDoc_testsConfig.cmake
Call Stack (most recent call first):
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/Trilinos/TrilinosConfig.cmake:146
(INCLUDE)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/modules/FindTRILINOS.cmake:40 (FIND_PACKAGE)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/configure/configure_2_trilinos.cmake:22 (FIND_PACKAGE)
build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1
(FEATURE_TRILINOS_FIND_EXTERNAL)
cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
cmake/configure/configure_2_trilinos.cmake:220 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:119 (VERBOSE_INCLUDE)
CMake Error at
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/PyTrilinos/PyTrilinosConfig.cmake:146
(INCLUDE):
include could not find load file:
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/PyTrilinos/../STKDoc_tests/STKDoc_testsConfig.cmake
Call Stack (most recent call first):
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/Trilinos/TrilinosConfig.cmake:146
(INCLUDE)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/modules/FindTRILINOS.cmake:40 (FIND_PACKAGE)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/configure/configure_2_trilinos.cmake:22 (FIND_PACKAGE)
build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1
(FEATURE_TRILINOS_FIND_EXTERNAL)
cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
cmake/configure/configure_2_trilinos.cmake:220 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:119 (VERBOSE_INCLUDE)
CMake Warning at
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/Trilinos/TrilinosConfig.cmake:156
(MESSAGE):
Component "STKDoc_tests" NOT found.
Call Stack (most recent call first):
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/modules/FindTRILINOS.cmake:40 (FIND_PACKAGE)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/configure/configure_2_trilinos.cmake:22 (FIND_PACKAGE)
build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1
(FEATURE_TRILINOS_FIND_EXTERNAL)
cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
cmake/configure/configure_2_trilinos.cmake:220 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:119 (VERBOSE_INCLUDE)
CMake Error at
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/Trilinos/TrilinosConfig.cmake:238
(include):
include could not find load file:
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/cmake/Trilinos/../STKDoc_tests/STKDoc_testsConfig.cmake
Call Stack (most recent call first):
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/modules/FindTRILINOS.cmake:40 (FIND_PACKAGE)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/configure/configure_2_trilinos.cmake:22 (FIND_PACKAGE)
build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1
(FEATURE_TRILINOS_FIND_EXTERNAL)
cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
cmake/configure/configure_2_trilinos.cmake:220 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:119 (VERBOSE_INCLUDE)
-- Found EPETRA_CONFIG_H
-- Found SACADO_CONFIG_H
-- Found SACADO_CMATH_HPP
-- Performing Test TRILINOS_SUPPORTS_CPP11
-- Performing Test TRILINOS_SUPPORTS_CPP11 - Success
-- Performing Test TRILINOS_HAS_C99_TR1_WORKAROUND
-- Performing Test TRILINOS_HAS_C99_TR1_WORKAROUND - Success
-- Found TRILINOS_LIBRARY_pike-blackbox
-- Found TRILINOS_LIBRARY_trilinoscouplings
-- Found TRILINOS_LIBRARY_msqutil
-- Found TRILINOS_LIBRARY_mesquite
-- Found TRILINOS_LIBRARY_pytrilinos
-- Found TRILINOS_LIBRARY_ctrilinos
-- Found TRILINOS_LIBRARY_sundancePdeopt
-- Found TRILINOS_LIBRARY_sundanceStdFwk
-- Found TRILINOS_LIBRARY_sundanceStdMesh
-- Found TRILINOS_LIBRARY_sundanceCore
-- Found TRILINOS_LIBRARY_sundanceInterop
-- Found TRILINOS_LIBRARY_sundanceUtils
-- Found TRILINOS_LIBRARY_sundancePlaya
-- Found TRILINOS_LIBRARY_piro
-- Found TRILINOS_LIBRARY_rol
-- Found TRILINOS_LIBRARY_stokhos_muelu
-- Found TRILINOS_LIBRARY_stokhos_ifpack2
-- Found TRILINOS_LIBRARY_stokhos_amesos2
-- Found TRILINOS_LIBRARY_stokhos_tpetra
-- Found TRILINOS_LIBRARY_stokhos_sacado
-- Found TRILINOS_LIBRARY_stokhos
-- Found TRILINOS_LIBRARY_moochothyra
-- Found TRILINOS_LIBRARY_moocho
-- Found TRILINOS_LIBRARY_rythmos
-- Found TRILINOS_LIBRARY_muelu-adapters
-- Found TRILINOS_LIBRARY_muelu-interface
-- Found TRILINOS_LIBRARY_muelu
-- Found TRILINOS_LIBRARY_moertel
-- Found TRILINOS_LIBRARY_locathyra
-- Found TRILINOS_LIBRARY_locaepetra
-- Found TRILINOS_LIBRARY_localapack
-- Found TRILINOS_LIBRARY_loca
-- Found TRILINOS_LIBRARY_noxepetra
-- Found TRILINOS_LIBRARY_noxlapack
-- Found TRILINOS_LIBRARY_nox
-- Found TRILINOS_LIBRARY_phalanx
-- Found TRILINOS_LIBRARY_stk_expreval
-- Found TRILINOS_LIBRARY_stk_mesh_fixtures
-- Found TRILINOS_LIBRARY_stk_search_util_base
-- Found TRILINOS_LIBRARY_stk_search
-- Found TRILINOS_LIBRARY_stk_unit_test_utils
-- Found TRILINOS_LIBRARY_stk_io_util
-- Found TRILINOS_LIBRARY_stk_io
-- Found TRILINOS_LIBRARY_stk_mesh_base
-- Found TRILINOS_LIBRARY_stk_topology
-- Found TRILINOS_LIBRARY_stk_util_use_cases
-- Found TRILINOS_LIBRARY_stk_util_registry
-- Found TRILINOS_LIBRARY_stk_util_parallel
-- Found TRILINOS_LIBRARY_stk_util_diag
-- Found TRILINOS_LIBRARY_stk_util_env
-- Found TRILINOS_LIBRARY_stk_util_util
-- Found TRILINOS_LIBRARY_stkclassic_search_util
-- Found TRILINOS_LIBRARY_stkclassic_search
-- Found TRILINOS_LIBRARY_stkclassic_rebalance_utils
-- Found TRILINOS_LIBRARY_stkclassic_rebalance
-- Found TRILINOS_LIBRARY_stkclassic_linsys
-- Found TRILINOS_LIBRARY_stkclassic_io_util
-- Found TRILINOS_LIBRARY_stkclassic_io
-- Found TRILINOS_LIBRARY_stkclassic_expreval
-- Found TRILINOS_LIBRARY_stkclassic_algsup
-- Found TRILINOS_LIBRARY_stkclassic_mesh_fem
-- Found TRILINOS_LIBRARY_stkclassic_mesh_base
-- Found TRILINOS_LIBRARY_stkclassic_util_unit_test_support
-- Found TRILINOS_LIBRARY_stkclassic_util_parallel
-- Found TRILINOS_LIBRARY_stkclassic_util_diag
-- Found TRILINOS_LIBRARY_stkclassic_util_env
-- Found TRILINOS_LIBRARY_stkclassic_util_util
-- Found TRILINOS_LIBRARY_intrepid
-- Found TRILINOS_LIBRARY_teko
-- Found TRILINOS_LIBRARY_fei_trilinos
-- Found TRILINOS_LIBRARY_fei_base
-- Found TRILINOS_LIBRARY_stratimikos
-- Found TRILINOS_LIBRARY_stratimikosbelos
-- Found TRILINOS_LIBRARY_stratimikosaztecoo
-- Found TRILINOS_LIBRARY_stratimikosamesos
-- Found TRILINOS_LIBRARY_stratimikosml
-- Found TRILINOS_LIBRARY_stratimikosifpack
-- Found TRILINOS_LIBRARY_ifpack2-adapters
-- Found TRILINOS_LIBRARY_ifpack2
-- Found TRILINOS_LIBRARY_anasazitpetra
-- Found TRILINOS_LIBRARY_ModeLaplace
-- Found TRILINOS_LIBRARY_anasaziepetra
-- Found TRILINOS_LIBRARY_anasazi
-- Found TRILINOS_LIBRARY_komplex
-- Found TRILINOS_LIBRARY_svdi_cgi
-- Found TRILINOS_LIBRARY_svdi_cdr
-- Found TRILINOS_LIBRARY_suplib_cpp
-- Found TRILINOS_LIBRARY_suplib_c
-- Found TRILINOS_LIBRARY_supes
-- Found TRILINOS_LIBRARY_aprepro_lib
-- Found TRILINOS_LIBRARY_chaco
-- Found TRILINOS_LIBRARY_io_info_lib
-- Found TRILINOS_LIBRARY_Ionit
-- Found TRILINOS_LIBRARY_Iotr
-- Found TRILINOS_LIBRARY_Iohb
-- Found TRILINOS_LIBRARY_Iogn
-- Found TRILINOS_LIBRARY_Iopg
-- Found TRILINOS_LIBRARY_Ioss
-- Found TRILINOS_LIBRARY_amesos2
-- Found TRILINOS_LIBRARY_shylu
-- Found TRILINOS_LIBRARY_belostpetra
-- Found TRILINOS_LIBRARY_belosepetra
-- Found TRILINOS_LIBRARY_belos
-- Found TRILINOS_LIBRARY_ml
-- Found TRILINOS_LIBRARY_ifpack
-- Found TRILINOS_LIBRARY_zoltan2
-- Found TRILINOS_LIBRARY_pamgen_extras
-- Found TRILINOS_LIBRARY_pamgen
-- Found TRILINOS_LIBRARY_amesos
-- Found TRILINOS_LIBRARY_galeri-xpetra
-- Found TRILINOS_LIBRARY_galeri-epetra
-- Found TRILINOS_LIBRARY_aztecoo
-- Found TRILINOS_LIBRARY_dpliris
-- Found TRILINOS_LIBRARY_isorropia
-- Found TRILINOS_LIBRARY_optipack
-- Found TRILINOS_LIBRARY_xpetra-sup
-- Found TRILINOS_LIBRARY_xpetra
-- Found TRILINOS_LIBRARY_thyratpetra
-- Found TRILINOS_LIBRARY_thyraepetraext
-- Found TRILINOS_LIBRARY_thyraepetra
-- Found TRILINOS_LIBRARY_thyracore
-- Found TRILINOS_LIBRARY_epetraext
-- Found TRILINOS_LIBRARY_tpetraext
-- Found TRILINOS_LIBRARY_tpetrainout
-- Found TRILINOS_LIBRARY_tpetra
-- Found TRILINOS_LIBRARY_kokkostsqr
-- Found TRILINOS_LIBRARY_tpetrakernels
-- Found TRILINOS_LIBRARY_tpetraclassiclinalg
-- Found TRILINOS_LIBRARY_tpetraclassicnodeapi
-- Found TRILINOS_LIBRARY_tpetraclassic
-- Found TRILINOS_LIBRARY_triutils
-- Found TRILINOS_LIBRARY_globipack
-- Found TRILINOS_LIBRARY_shards
-- Found TRILINOS_LIBRARY_zoltan
-- Found TRILINOS_LIBRARY_epetra
-- Found TRILINOS_LIBRARY_sacado
-- Found TRILINOS_LIBRARY_rtop
-- Found TRILINOS_LIBRARY_teuchoskokkoscomm
-- Found TRILINOS_LIBRARY_teuchoskokkoscompat
-- Found TRILINOS_LIBRARY_teuchosremainder
-- Found TRILINOS_LIBRARY_teuchosnumerics
-- Found TRILINOS_LIBRARY_teuchoscomm
-- Found TRILINOS_LIBRARY_teuchosparameterlist
-- Found TRILINOS_LIBRARY_teuchoscore
-- Found TRILINOS_LIBRARY_kokkosalgorithms
-- Found TRILINOS_LIBRARY_kokkoscontainers
-- Found TRILINOS_LIBRARY_kokkoscore
-- Found TRILINOS_LIBRARY_tpi
-- Found TRILINOS_LIBRARY_gtest
-- TRILINOS_VERSION: 12.10.1
-- TRILINOS_LIBRARIES:
/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libpike-blackbox.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtrilinoscouplings.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmsqutil.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmesquite.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libpytrilinos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libctrilinos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundancePdeopt.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundanceStdFwk.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundanceStdMesh.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundanceCore.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundanceInterop.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundanceUtils.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsundancePlaya.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libpiro.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/librol.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstokhos_muelu.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstokhos_ifpack2.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstokhos_amesos2.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstokhos_tpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstokhos_sacado.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstokhos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmoochothyra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmoocho.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/librythmos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmuelu-adapters.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmuelu-interface.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmuelu.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libmoertel.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/liblocathyra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/liblocaepetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/liblocalapack.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libloca.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libnoxepetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libnoxlapack.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libnox.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libphalanx.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_expreval.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_mesh_fixtures.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_search_util_base.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_search.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_unit_test_utils.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_io_util.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_io.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_mesh_base.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_topology.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_util_use_cases.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_util_registry.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_util_parallel.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_util_diag.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_util_env.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstk_util_util.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_search_util.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_search.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_rebalance_utils.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_rebalance.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_linsys.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_io_util.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_io.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_expreval.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_algsup.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_mesh_fem.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_mesh_base.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_util_unit_test_support.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_util_parallel.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_util_diag.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_util_env.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstkclassic_util_util.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libintrepid.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteko.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libfei_trilinos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libfei_base.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstratimikos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstratimikosbelos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstratimikosaztecoo.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstratimikosamesos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstratimikosml.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libstratimikosifpack.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libifpack2-adapters.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libifpack2.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libanasazitpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libModeLaplace.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libanasaziepetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libanasazi.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libkomplex.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsvdi_cgi.a;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsvdi_cdr.a;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsuplib_cpp.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsuplib_c.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsupes.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libaprepro_lib.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libchaco.a;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libio_info_lib.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libIonit.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libIotr.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libIohb.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libIogn.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libIopg.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libIoss.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libamesos2.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libshylu.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libbelostpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libbelosepetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libbelos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libml.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libifpack.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libzoltan2.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libpamgen_extras.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libpamgen.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libamesos.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libgaleri-xpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libgaleri-epetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libaztecoo.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libdpliris.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libisorropia.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/liboptipack.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libxpetra-sup.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libxpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libthyratpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libthyraepetraext.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libthyraepetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libthyracore.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libepetraext.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetraext.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetrainout.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libkokkostsqr.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetrakernels.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetraclassiclinalg.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetraclassicnodeapi.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpetraclassic.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtriutils.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libglobipack.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libshards.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libzoltan.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libepetra.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libsacado.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/librtop.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchoskokkoscomm.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchoskokkoscompat.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchosremainder.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchosnumerics.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchoscomm.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchosparameterlist.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libteuchoscore.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libkokkosalgorithms.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libkokkoscontainers.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libkokkoscore.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libtpi.so;/local/earthsci/klmz32/Documents/LAB/trilinos/lib/libgtest.so;/usr/lib/x86_64-linux-gnu/libboost_program_options.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
-- TRILINOS_INCLUDE_DIRS:
/local/earthsci/klmz32/Documents/LAB/trilinos/include;/usr/include
-- TRILINOS_USER_INCLUDE_DIRS:
/local/earthsci/klmz32/Documents/LAB/trilinos/include;/usr/include
-- Found TRILINOS
-- Check whether the found trilinos package contains all required modules:
-- Found Amesos
-- Found Epetra
-- Found Ifpack
-- Found AztecOO
-- Found Sacado
-- Found Teuchos
-- Found ML
-- Found MueLu
-- DEAL_II_WITH_TRILINOS successfully set up with external dependencies.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_2_umfpack.cmake
-- DEAL_II_WITH_UMFPACK has unmet configuration requirements:
DEAL_II_WITH_LAPACK has to be set to "ON".
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_3_petsc.cmake
-- PETSC_LIBRARY not found! Call:
-- FIND_LIBRARY(PETSC_LIBRARY NAMES petsc HINTS / PATH_SUFFIXES lib
lib64 lib)
-- PETSC_INCLUDE_DIR_ARCH not found! Call:
-- FIND_PATH(PETSC_INCLUDE_DIR_ARCH petscconf.h HINTS / PATH_SUFFIXES
petsc include include/petsc)
-- PETSC_INCLUDE_DIR_COMMON not found! Call:
-- FIND_PATH(PETSC_INCLUDE_DIR_COMMON petscversion.h HINTS /
PATH_SUFFIXES petsc include include/petsc)
-- PETSC_PETSCVARIABLES not found! Call:
-- FIND_FILE(PETSC_PETSCVARIABLES NAMES petscvariables HINTS /
PATH_SUFFIXES conf)
-- PETSC_LIBRARIES: *** Required variable "PETSC_LIBRARY" set to NOTFOUND
***
-- PETSC_INCLUDE_DIRS: *** Required variable "PETSC_INCLUDE_DIR_COMMON"
set to NOTFOUND ***
-- PETSC_USER_INCLUDE_DIRS: *** Required variable
"PETSC_INCLUDE_DIR_COMMON" set to NOTFOUND ***
-- Could NOT find PETSC
-- DEAL_II_WITH_PETSC has unmet external dependencies.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_arpack.cmake
-- DEAL_II_WITH_ARPACK has unmet configuration requirements:
DEAL_II_WITH_LAPACK has to be set to "ON".
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_boost.cmake
-- Boost version: 1.54.0
-- Found the following Boost libraries:
-- iostreams
-- serialization
-- system
-- thread
-- BOOST_VERSION: 1.54.0
-- BOOST_LIBRARIES:
/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_thread.so
-- BOOST_INCLUDE_DIRS: /usr/include
-- BOOST_USER_INCLUDE_DIRS: /usr/include
-- Found BOOST
-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs
-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs - Success
-- DEAL_II_WITH_BOOST successfully set up with external dependencies.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_hdf5.cmake
-- Found HDF5_INCLUDE_DIR
-- Found HDF5_LIBRARY
-- Found HDF5_HL_LIBRARY
-- Found HDF5_PUBCONF
-- HDF5_LIBRARIES:
/local/earthsci/klmz32/Documents/LAB/sources/hdf5-1.10.0-patch1/lib/libhdf5_hl.so;/local/earthsci/klmz32/Documents/LAB/sources/hdf5-1.10.0-patch1/lib/libhdf5.so;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
-- HDF5_INCLUDE_DIRS:
/local/earthsci/klmz32/Documents/LAB/sources/hdf5-1.10.0-patch1/include
-- HDF5_USER_INCLUDE_DIRS:
/local/earthsci/klmz32/Documents/LAB/sources/hdf5-1.10.0-patch1/include
-- Found HDF5
-- DEAL_II_WITH_HDF5 successfully set up with external dependencies.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_muparser.cmake
-- MUPARSER_LIBRARY not found! Call:
-- FIND_LIBRARY(MUPARSER_LIBRARY NAMES muparser muparserd HINTS
PATH_SUFFIXES lib lib64 lib)
-- MUPARSER_INCLUDE_DIR not found! Call:
-- FIND_PATH(MUPARSER_INCLUDE_DIR muParserDef.h HINTS PATH_SUFFIXES
include)
-- MUPARSER_LIBRARIES: *** Required variable "MUPARSER_LIBRARY" set to
NOTFOUND ***
-- MUPARSER_INCLUDE_DIRS: *** Required variable "MUPARSER_INCLUDE_DIR"
set to NOTFOUND ***
-- Could NOT find MUPARSER
-- DEAL_II_WITH_MUPARSER has unmet external dependencies.
-- DEAL_II_WITH_MUPARSER successfully set up with bundled packages.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_netcdf.cmake
-- NETCDF_INCLUDE_DIR not found! Call:
-- FIND_PATH(NETCDF_INCLUDE_DIR netcdfcpp.h HINTS PATH_SUFFIXES netcdf
include)
-- NETCDF_CPLUSPLUS_LIBRARY not found! Call:
-- FIND_LIBRARY(NETCDF_CPLUSPLUS_LIBRARY NAMES netcdf_c++ netcdf_cpp
HINTS PATH_SUFFIXES lib lib64 lib)
-- NETCDF_C_LIBRARY not found! Call:
-- FIND_LIBRARY(NETCDF_C_LIBRARY NAMES netcdf HINTS PATH_SUFFIXES lib
lib64 lib)
-- NETCDF_LIBRARIES: *** Required variable "NETCDF_CPLUSPLUS_LIBRARY" set
to NOTFOUND ***
-- NETCDF_INCLUDE_DIRS: *** Required variable "NETCDF_INCLUDE_DIR" set to
NOTFOUND ***
-- Could NOT find NETCDF
-- DEAL_II_WITH_NETCDF has unmet external dependencies.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_opencascade.cmake
-- OPENCASCADE_INCLUDE_DIR not found! Call:
-- FIND_PATH(OPENCASCADE_INCLUDE_DIR Standard_Version.hxx HINTS
PATH_SUFFIXES include include/oce inc)
-- OPENCASCADE_TKBO not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKBO NAMES TKBO HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKBool not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKBool NAMES TKBool HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKBRep not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKBRep NAMES TKBRep HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKernel not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKernel NAMES TKernel HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKFeat not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKFeat NAMES TKFeat HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKFillet not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKFillet NAMES TKFillet HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKG2d not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKG2d NAMES TKG2d HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKG3d not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKG3d NAMES TKG3d HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKGeomAlgo not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKGeomAlgo NAMES TKGeomAlgo HINTS
PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib
lin32/gcc/lib)
-- OPENCASCADE_TKGeomBase not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKGeomBase NAMES TKGeomBase HINTS
PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib
lin32/gcc/lib)
-- OPENCASCADE_TKHLR not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKHLR NAMES TKHLR HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKIGES not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKIGES NAMES TKIGES HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKMath not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKMath NAMES TKMath HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKMesh not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKMesh NAMES TKMesh HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKOffset not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKOffset NAMES TKOffset HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKPrim not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKPrim NAMES TKPrim HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKShHealing not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKShHealing NAMES TKShHealing HINTS
PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib
lin32/gcc/lib)
-- OPENCASCADE_TKSTEP not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKSTEP NAMES TKSTEP HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKSTEPAttr not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKSTEPAttr NAMES TKSTEPAttr HINTS
PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib
lin32/gcc/lib)
-- OPENCASCADE_TKSTEPBase not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKSTEPBase NAMES TKSTEPBase HINTS
PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib
lin32/gcc/lib)
-- OPENCASCADE_TKSTL not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKSTL NAMES TKSTL HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKTopAlgo not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKTopAlgo NAMES TKTopAlgo HINTS
PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib
lin32/gcc/lib)
-- OPENCASCADE_TKXSBase not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKXSBase NAMES TKXSBase HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_LIBRARIES: *** Required variable "OPENCASCADE_TKBO" set to
NOTFOUND ***
-- OPENCASCADE_INCLUDE_DIRS: *** Required variable
"OPENCASCADE_INCLUDE_DIR" set to NOTFOUND ***
-- OPENCASCADE_USER_INCLUDE_DIRS: *** Required variable
"OPENCASCADE_INCLUDE_DIR" set to NOTFOUND ***
-- Could NOT find OPENCASCADE
-- DEAL_II_WITH_OPENCASCADE has unmet external dependencies.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_p4est.cmake
-- Found SC_INCLUDE_DIR
-- Found P4EST_LIBRARY_OPTIMIZED
-- Found SC_LIBRARY_OPTIMIZED
-- Found P4EST_LIBRARY_DEBUG
-- Found SC_LIBRARY_DEBUG
-- Found P4EST_INCLUDE_DIR
-- P4EST_VERSION: 1.1
-- P4EST_LIBRARIES:
optimized;/local/earthsci/klmz32/Documents/LAB/sources/p4est/FAST/lib/libp4est.so;/local/earthsci/klmz32/Documents/LAB/sources/p4est/FAST/lib/libsc.so;debug;/local/earthsci/klmz32/Documents/LAB/sources/p4est/DEBUG/lib/libp4est.so;/local/earthsci/klmz32/Documents/LAB/sources/p4est/DEBUG/lib/libsc.so;general;/usr/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libhwloc.so
-- P4EST_INCLUDE_DIRS:
/local/earthsci/klmz32/Documents/LAB/sources/p4est/FAST/include;/local/earthsci/klmz32/Documents/LAB/sources/p4est/FAST/include
-- P4EST_USER_INCLUDE_DIRS:
/local/earthsci/klmz32/Documents/LAB/sources/p4est/FAST/include;/local/earthsci/klmz32/Documents/LAB/sources/p4est/FAST/include
-- Found P4EST
-- DEAL_II_WITH_P4EST successfully set up with external dependencies.
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/configure/configure_slepc.cmake
-- DEAL_II_WITH_SLEPC has unmet configuration requirements:
DEAL_II_WITH_PETSC has to be set to "ON".
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_cpack.cmake
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_custom_targets.cmake
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_finalize.cmake
--
-- Include
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/cmake/setup_write_config.cmake
-- Query git repository information.
-- Found Git: /usr/bin/git (found version "1.9.1")
--
-- Configuring done. Proceed to target definitions now.
-- Setting up bundled features
-- Performing Test DEAL_II_HAVE_FLAG_Wnested_anon_types
-- Performing Test DEAL_II_HAVE_FLAG_Wnested_anon_types - Failed
-- Setting up bundled features - Done
-- Setting up library
-- Setting up library - Done
-- Setting up project configuration
-- Setting up project configuration - Done
-- Setting up examples
-- Setting up examples - Done
-- Setting up quick_tests in DEBUG mode
-- Setting up quick_tests in DEBUG mode - Done
-- Setting up testsuite
-- Setting up testsuite - Done
###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /local/earthsci/klmz32/Documents/LAB/dealii
# CMAKE_SOURCE_DIR:
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1
# (version 8.4.1)
# CMAKE_BINARY_DIR:
/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/build
# CMAKE_CXX_COMPILER: GNU 4.8.5 on platform Linux x86_64
# /usr/bin/mpicxx
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON,
DEAL_II_ALLOW_AUTODETECTION = ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# ( DEAL_II_WITH_ARPACK = OFF )
# DEAL_II_WITH_BOOST set up with external dependencies
# DEAL_II_WITH_BZIP2 set up with external dependencies
# DEAL_II_WITH_CXX11 = ON
# ( DEAL_II_WITH_CXX14 = OFF )
# DEAL_II_WITH_HDF5 set up with external dependencies
# ( DEAL_II_WITH_LAPACK = OFF )
# ( DEAL_II_WITH_METIS = OFF )
# DEAL_II_WITH_MPI set up with external dependencies
# DEAL_II_WITH_MUPARSER set up with bundled packages
# ( DEAL_II_WITH_NETCDF = OFF )
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# DEAL_II_WITH_P4EST set up with external dependencies
# ( DEAL_II_WITH_PETSC = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# DEAL_II_WITH_TRILINOS set up with external dependencies
# ( DEAL_II_WITH_UMFPACK = OFF )
# DEAL_II_WITH_ZLIB set up with external dependencies
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
# Detailed information (compiler flags, feature configuration) can be
found in detailed.log
#
# Run $ make info to print a help message with a list of top level
targets
#
###
-- Configuring incomplete, errors occurred!
See also
"/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/build/CMakeFiles/CMakeOutput.log".
See also
"/local/earthsci/klmz32/Documents/LAB/sources/dealii-8.4.1/build/CMakeFiles/CMakeError.log".
On Tuesday, February 28, 2017 at 10:10:28 PM UTC, Wolfgang Bangerth wrote:
>
>
> Phil,
>
> > I'm a new user trying to ultimately install ASPECT, currently setting up
> deal.ii.
> >
> > I've managed to almost get deal.ii to configure, but errors have
> occurred.
>
> Which errors specifically do you see? detailed.log doesn't show anything
> obvious, but I may also be looking in the wrong place.
>
> Best
> W.
>
>
> --
> ------------------------------------------------------------------------
> Wolfgang Bangerth email: bang...@colostate.edu
> <javascript:>
> www: http://www.math.colostate.edu/~bangerth/
>
>
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
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