Re: [deal.II] How to build an efficient cluster?

2018-10-24 Thread Pai Liu
Hi Wolfgang, Thank you for your quick response and your information! They are really helpful. Best, Pai -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are

Re: [deal.II] Re: Computing min and max eigenvalues

2018-10-24 Thread Earl Fairall
I am posing this question purely out of personal interest: what do you mean by maximum and minimum eigenvalue? I am confused by this. Earl On Tue, Oct 23, 2018 at 8:36 AM MichaƂ Wichrowski wrote: > > Dear Bruno > >> >> > 2) The largest eigenvalue is computed instead of the largest one, and, >

Re: [deal.II] Incompressible fluid with fully periodic boundary conditions

2018-10-24 Thread Wolfgang Bangerth
Magda, let me ask a few more specific questions about your post, even though I'm not sure they help you with the bigger question: > I'm a kind of new user of dealii and I'm trying to set up the boundary > conditions for a domain [0, 1] X [0, 1] of incompressible fluid with fully > periodic bo

Re: [deal.II] How to build an efficient cluster?

2018-10-24 Thread Wolfgang Bangerth
On 10/24/18 8:27 PM, Pai Liu wrote: > > *So, is there a more professional way to build a cluster? What hardware do we > need? Is there is way to connect the computer buses of these workstations to > provide high communication speed?* > Any suggestion will be appreciated. This is really a much l

[deal.II] How to build an efficient cluster?

2018-10-24 Thread Pai Liu
Hi all, We would like to run DEALII in parallel on a cluster, but we do not know how to build an efficient one. We have three workstations, and for now we just connect them with network cable and switch. By this way we think the communication speed may be limited. *So, is there a more profes

Re: [deal.II] Dealii installation error

2018-10-24 Thread Wolfgang Bangerth
On 10/24/2018 05:54 PM, Chih-Che Chueh wrote: > > ./configure --enable-shared --enable-mpi > --prefix=/home/chueh5851a/software/p4est-2.0/FAST > make -j12 &> OUT.log > make install > cp -pr /home/chueh5851a/software/p4est-2.0/FAST > /home/chueh5851a/software/p4est-2.0/DEBUG > > I guess that the

Re: [deal.II] Dealii installation error

2018-10-24 Thread Chih-Che Chueh
Hi Wolfgang, I am happy to say that I can run both step-32.debug and step-32.release successfully in parallel. Basically, I re-install p4est again by following the steps: ./configure --enable-shared --enable-mpi --prefix=/home/chueh5851a/software/p4est-2.0/FAST make -j12 &> OUT.log make install c

Re: [deal.II] Re: After "make install", there are some Errors when install Deal.II-9.0.1

2018-10-24 Thread Matthias Maier
On Wed, Oct 24, 2018, at 18:18 CDT, Wolfgang Bangerth wrote: > Chucui, > >> My command lines are >> >> $cmake /vol7/home/zhaoyucan1016/dealii-9.0.1/dealii-9.0.1 >> [...] >> -DCMAKE_INSTALL_PREFIX=/vol7/home/zhaoyucan1016/dealii-9.0.1/build This looks odd. You are configuring in-source and

Re: [deal.II] Dealii installation error

2018-10-24 Thread Wolfgang Bangerth
On 10/24/2018 05:22 PM, Chih-Che Chueh wrote: > We did not find a recent lua containing the function lua_createtable. > This is OK if the following does not matter to you: > Including sc_lua.h in your code will abort the compilation. > You can fix this by compiling a working lua and pointing LIBS t

Re: [deal.II] Dealii installation error

2018-10-24 Thread Chih-Che Chueh
Hi Wolfgang, I don't know what is happening, but I see that all of the cases you show > run > the tutorial programs in release mode. Can you run them in debug mode and > see > whether you can get a better error message this way? > I will try this later after I figure out this warning happening at

Re: [deal.II] Re: After "make install", there are some Errors when install Deal.II-9.0.1

2018-10-24 Thread Wolfgang Bangerth
Chucui, > The newest result are still the same. After "make install" it shows: > > [ 82%] Built target obj_rol_debug > Scanning dependencies of target step-3.release > [ 82%] Building CXX object > examples/CMakeFiles/step-3.release.dir/step-3/step-3.cc.o > [ 82%] Linking CXX executable ../bin/

Re: [deal.II] Dealii installation error

2018-10-24 Thread Wolfgang Bangerth
On 10/23/18 8:16 PM, Chih-Che Chueh wrote: > > Hard to tell what's going wrong. What happens if you run it with one MPI > process (or without the 'mpirun -np 4')? > > > Still, not working as you can see below. Chih-Che, I don't know what is happening, but I see that all of the cases you

Re: [deal.II] Re: Error in installing deal.ii with spack on CentOs7

2018-10-24 Thread Alberto Salvadori
Very good, thanks! Sent from my iPad > On 24 Oct 2018, at 11:08, Denis Davydov wrote: > > Hi Alberto, > > I figured out what's happening. The issue you see is NOT related to what me > and JP suggested. > It is a separate issues related to constraints on compilers from > suite-sparse. I creat

[deal.II] Re: Error in installing deal.ii with spack on CentOs7

2018-10-24 Thread Denis Davydov
Hi Alberto, I figured out what's happening. The issue you see is NOT related to what me and JP suggested. It is a separate issues related to constraints on compilers from suite-sparse. I created a PR in spack to clarify this: https://github.com/spack/spack/pull/9622/ Once it's merged, you would