Hi ccp4bb !!!
Does the rmsd estimation (for eg. rmsd_bonds ) depends on the program we use
??
Example : shifting from Refmac to CNS. There appears to be an increase in
rmsd of bonds even without refining the structure in CNS. Is the estimation
methods are different or am i doing something wrong
Hi all !!!
Is it possible to fix one domain and search for the second one in
phaser !!! What are the keywords to use.
I have a protein with two domains. It i give both the domains together or as
two ensembles it is not finding the solution. If i give only one domain it
is giving the soluti
Hi all !!
I am working on some deletion mutants. Mutants crystallized in
the same space group with similar cell dimensions. My questions are the
following??
1. Is the free R flag has to be maintained across all the mutants with
respect to the native.
2. Does B-factor has to be flatte
Hi ccp4bb !!
I am refining a 3.1 A resolution structure which has partial twinning
with twinning fraction 0.27 (space group P61).
When i refined in CNS with twin_lsq target i got 0.1529 and 0.2384 as R and
Rfree.
There is almost 8-9% gap in R and Rfree. Map quality is good enough to trace
al
Hi CCP4bb ,
Thanks for your suggestions... here is the summary of the
structure...
I am working in deletion and point mutants. I have a mutant (P61 resoln
3.1A) with partial twinning with twinning fraction 0.28. Wilson b-factor is
50. The data collected in the home source with norma
Dear ccp4 Community,
I am sorry for the off topic question.
As you all aware there are many docking programs available from
commercial vendors/. And
everyone claims that their product is the best in the business. Here i would
like to ask for some experiences from this wonderful commun
Hi all !!
Sorry for the off topic question. Has anyone tried installing CCP4 and
coot in Ubuntu Heran Hardy 64 bit... I have been googling and tried the
suggestions of Bill & Martyn's page... but no success with the amd 64 bit
machine.. all the instructions i get are for 32bit machines.. P
Thanks Tim that worked fine.. my ccp4i interface is starting but the
programs are not running... i have RH 8 binaries... even when i tried to run
in the command line for example go to $CCP4/bin and try ./pdbset or whatever
it may be it is telling command not found.. i am sure that i have sourced
th
synaptic for lib32 package lib32stdc++6 helped me over a
> similar problem. You may need others.
>
> m
>
>
> On Tue, 2008-06-10 at 20:16 +0530, john kryst wrote:
> > Thanks Tim that worked fine.. my ccp4i interface is starting but the
> > programs are not running... i have
Hi all !!
I am working with two data sets of same protein (130a/a) with resolutions
2.8 and 3.2 A. In both the cases the density for 100-130 aa is not very
clear.. it forms couple of helices.. i can see a long tube going but it is
feature less.. It is a MR solution.. i have tried TLS refinement
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