[ccp4bb] sodium vs water near

2012-04-16 Thread chandan kishore
--- On Mon, 24/1/11, Eleanor Dodson wrote: From: Eleanor Dodson Subject: Re: [ccp4bb] Merging statistics and systematic absences To: CCP4BB@JISCMAIL.AC.UK Date: Monday, 24 Jan

[ccp4bb] sodium vs water near methionine sulfur

2011-01-24 Thread chandan kishore
Dear All, Electron density picture is attached here. or https://docs.google.com/leaf?id=0B89uj7DSbtUWNDRmMzZhNTAtMzlkMC00MDllLTgxYmItNDI0NzUwMjdlNTli&hl=en I am working on a structure at 1.45 Ang resolution. I have noticed a density that looks like water. However, it is surrounded by by six ot

[ccp4bb] buffers for crystallization

2011-01-26 Thread chandan kishore
Hi Everyone, I have to crystallize one protein which contains a zinc fingure motifs, I am facing a problem in crystallization. I already used 388 buffers . Can anyone suggest me some books or papers freely available online on Buffers required for crystallization. Thanks

Re: [ccp4bb] Sequence Alignment Question

2011-08-18 Thread chandan kishore
Use ALINE sequence editor. if you multiple sequence alignment file from clustalW, you can open in ALINE software and generate publication quality of image. http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/  --- On Thu, 18/8/11, Yuri wrote: From: Yuri Subject: [ccp4bb] Sequence Alignm

[ccp4bb] ccp not open in new users account

2009-11-10 Thread chandan kishore
hi,   i have install CCP4 in /home/chandan/ccp4/ccp4-6.1.1. its open perfectly in this directory by using ccp4i command.   but when i create a new user account in linux, then ccp4i was not working in new user account.                            please suggest me how i can

[ccp4bb] unsubscribe ccp4bb

2016-10-23 Thread chandan kishore

Re: [ccp4bb] Autodock Vina output files

2013-02-25 Thread chandan kishore
Dear Christine, Your fist question is regarding range of energy in high affinity. In Autodock Vina high affinity energy varies from -9 to -11 Kcal/mol.  In my opinion  -4.5 to -3.0 Kcal/mol is moderate affinity for ligand. Second question is how to save individual orientation of Vina output in