[ccp4bb] Fw: protein protein interactions

2020-02-10 Thread careinaedgo...@yahoo.com
Dear allApologies for off topic question but can anyone recommend good programs for identifying docking interfaces between two proteins. I do not know that these two proteins interact. I would like a level of confidence on a possible interaction. is there a good program to do this?kind reg

[ccp4bb] molecular graphics program accessibility

2020-04-17 Thread careinaedgo...@yahoo.com
Dear all,I have to teach online this year. I usually ask students to view and study protein structures using SPDBV and pymol. Does anyone know if these programs would run on smart devices? Not all students have computers. Or are there any alternative viewing programs that run on smart devices? t

[ccp4bb] Table showing rotational symmetry

2021-04-06 Thread careinaedgo...@yahoo.com
Can anyone send me a table that shows rotational symmetry in all viewing directions for the different crystal systems? I don't have my text book with me and I cannot find that tableThank you Careina. To unsubscribe from th

[ccp4bb] What could these crystals be?

2023-11-08 Thread careinaedgo...@yahoo.com
Hi allWe have been trying with no success to crystalize a protein. Recently we got these strange shape "crystals". They are hard and flat but they do not diffract at all. Any ideas as to what could cause this?Careina To un

Re: [ccp4bb] What could these crystals be?

2023-11-08 Thread careinaedgo...@yahoo.com
stephen.c...@rc-harwell.ac.uk tel 01235 567717 From: CCP4 bulletin board on behalf of careinaedgo...@yahoo.com <02531c126adf-dmarc-requ...@jiscmail.ac.uk> Sent: 08 November 2023 15:00 To: ccp4bb Subject: [ccp4bb] What could these crystals be? Hi allWe have been trying with no success

[ccp4bb] Crystals with DNA

2024-02-08 Thread careinaedgo...@yahoo.com
 Hello all. I am struggling to get defracting crystals with a protein DNA complex. The crystals are plentiful but they do not diffract. I am going back to the grind stone and relookong at my DNA sequence.Is there any wisdom you could give me with regards to what works best with DNA in crystals?F

Re: [ccp4bb] Crystals with DNA

2024-02-09 Thread careinaedgo...@yahoo.com
tical and you should be careful on your procedure. I remember that small cation like Li, may help too.  HTH Nicolas On 08/02/2024 12:25, careinaedgo...@yahoo.com wrote:  Hello all. I am struggling to get defracting crystals with a protein DNA complex. The crystals

[ccp4bb] Question about micro RNA structures

2024-07-23 Thread careinaedgo...@yahoo.com
Hello Everyone.I am working with miRNA for the first time. I would like to start of doing some docking studies to protein. Are there any suggestions on good tools to use to generate the miRNA structure from it's sequence?Kind regardsCareina  Yahoo Mail: Search, Organize, Conquer ##

[ccp4bb] Peptide design

2025-02-28 Thread careinaedgo...@yahoo.com
Dear allThis post is a bit off topic but I wonder if anyone could help direct me to a good tool to use for designing novel peptides with affinity for a certain protein?Kind regards Careina To unsubscribe from the CCP4BB