share (off-list) the pdb
files and the full log (no data required).
FYI, there is a Phenix specific bulletin board:
http://www.phenix-online.org/mailman/listinfo/phenixbb
Best regards,
Oleg Sobolev.
On Tue, Jun 23, 2020 at 12:18 AM Clemens Grimm <
clemens.gr...@biozentrum.uni-wuerzburg.de>
Hi Careina,
On behalf of Pavel Afonine:
This (and references inside) may be a start:
http://scripts.iucr.org/cgi-bin/paper?S0907444912001308
Then may be you could reuse some of existing presentations from here
https://www.phenix-online.org/presentations/
Best regards,
Oleg Sobolev.
On Mon
ation/reference/atom_selections.html
Expanding to include whole residues:
phenix.pdb_atom_selection model.pdb "residues_within(5, (resid 4 and name
CA))"
Dumping result to a .pdb file:
phenix.pdb_atom_selection model.pdb "residues_within(5, (resid 4 and name
CA))" --write-pdb-file selected.pdb
is a separate bulletin board for Phenix-specific questions:
http://www.phenix-online.org/mailman/listinfo/phenixbb
Best regards,
Oleg Sobolev.
> Thank you
> Dhiraj
>
> --
>
> To unsubscribe from the CCP4BB list, click the following link:
> ht
need help with any of these.
Best regards,
Oleg Sobolev.
On Sun, Jul 10, 2022 at 9:31 PM Abhilasha Thakur
wrote:
> Hello,
>
> I have a long list of PDB ids and I needed the all the biological assembly
> for each PDB Id, so in this case how I can get these biological assembly in
idation report" was able to obtain the report. Additionally,
"Comprehensive validation" tool in Phenix can process your original mmCIF
file and give you many of the numbers you would get in the PDB validation
report.
Please let me know (off-list or h...@phenix-online.org or PhenixBB)
Hello,
I found this one, 56 minutes but the quality leaves much to be desired:
https://web.archive.org/web/20180304013635/http://www.thirteen.org:80/naturally-obsessed/wp-content/blogs.dir/30/files/2013/01/Naturally_Obsessed_The_Making_of_a_Scientist.mp4
Best regards,
Oleg Sobolev.
On Tue, Mar
