Re: [ccp4bb] off topic: multiple structural sequence alignment

2010-01-12 Thread Mensur Dlakic
tsson == | Mensur Dlakic, PhD| Tel: (406) 994-6576| | Department of Microbiology| Fax: (406) 994-4926| | Montana State University | Lab: (406) 994-6237| | 109 Lewis Hall, P.O. Box 1

Re: [ccp4bb] Per-residue RMSD for multiple structures?

2010-02-22 Thread Mensur Dlakic
sity of Washington, Seattle 98195-7742 ========== | Mensur Dlakic, PhD| Tel: (406) 994-6576| | Department of Microbiology| Fax: (406) 994-4926| | Montana State University | Lab: (406) 994-6237| | 109 Lewis Hall, P.O. Box 1735

Re: [ccp4bb] Inverse 3D profile/threading

2008-04-02 Thread Mensur Dlakic
: that is I have a new structure (not in yet deposited in PDB) and I want to see what sequences might fit well to this 3D structure. Can someone point me in the right direction? -jason == | Mensur Dlakic, PhD

Re: [ccp4bb] helix generator

2008-07-31 Thread Mensur Dlakic
] *** == | Mensur Dlakic, PhD| Tel: (406) 994-6576| | Department of Microbiology| Fax: (406) 994-4926| | Montana State University

Re: [ccp4bb] DNA building program

2008-08-12 Thread Mensur Dlakic
sequence? Thanking you in advance... Raja == | Mensur Dlakic, PhD| Tel: (406) 994-6576| | Department of Microbiology| Fax: (406) 994-4926| | Montana State University

Re: [ccp4bb] mapping sequence conservation metrics on the B factor column ...

2009-01-29 Thread Mensur Dlakic
advance, Tassos ====== | Mensur Dlakic, PhD| Tel: (406) 994-6576| | Department of Microbiology| Fax: (406) 994-4926| | Montana State University | Lab: (406) 994-6237| | 109 Lewis Hall,

Re: [ccp4bb] problem in transformation of pqe 30 clone

2009-05-04 Thread Mensur Dlakic
;>> >>>> === 2009-04-29 17:02:00 You writed in your letter?=== >>>> >>>>> Hello everyone, >>>>> >>>>> My protein crystallised in the spacegroup P6522 with one protein >>>>> molecule in the asymmetric unit. I have a PEG molecule from the >>>>> crystallization condition which crosses a two-fold crystallographic >>>>> symmetr

Re: [ccp4bb] loop modelling?

2009-11-01 Thread Mensur Dlakic
urposes of further simulations etc thanks! tommi ====== | Mensur Dlakic, PhD| Tel: (406) 994-6576| | Department of Microbiology| Fax: (406) 994-4926| | Montana State