Re: [ccp4bb] a question related to SF-tool

2012-01-03 Thread Huanwang Yang
Dear Dialing It looks like that the conversion using the 'auto mode' is successful. The error message might come from the multiple 'Associated datasets '. If no amplitude or intensity are not found in the dataset, an error message will be shown. For a safe conversion, please always use the

Re: [ccp4bb] I really need a file(such as .pdb) contains pseudo tanslation

2010-10-12 Thread Huanwang Yang
Dear Tingwei Ting-Wei Jiang wrote: Dear all For a particular purpose, I have to use a file contains pseudo translation. All my trials were got from PDB but there's still no trans vector was detected using molrep-selfrotation. Or some structures on PDB don't provide the structure factor fi

Re: [ccp4bb] [phenixbb] what to do with disordered side chains

2011-03-31 Thread Huanwang Yang
If a part of sequence has no density, this part will be cut from coordinates. If the side chain of a residue is lack of density, the opinion is not converged. What about the ligand, if no density is observed? Huanwang Ed Pozharski wrote: The results of the online survey on what to do with di

Re: [ccp4bb] PDB Submission of SAD data.

2009-03-24 Thread Huanwang Yang
- Francis Reyes M.Sc. 215 UCB University of Colorado at Boulder gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D 8AE2 F2F4 90F7 9640 28BC 686F 78FD 6669 67BA 8D5D -- *Huanwang Yang

Re: [ccp4bb] relationship between resolution and B values

2013-01-19 Thread Huanwang Yang
Dear Qixu The RCSB has a webpage to show the statistics (the data populations and the correlation with the resolution) for all the annotated pdb data items. The current page is http://rcsb-auto-check.rutgers.edu/dev/pdbitem/index.html The graph that you need may be the one http://rcsb-auto-check

Re: [ccp4bb] relationship between resolution and B values

2013-01-19 Thread Huanwang Yang
//refine_B_iso_mean_res.data.png Regard, Huanwang On Sat, 19 Jan 2013 11:18:19 -0500, Huanwang Yang wrote: > Dear Qixu > > The RCSB has a webpage to show the statistics (the data populations and > the correlation with the resolution) for all the annotated pdb data items. > The current page is >