Re: [ccp4bb] Any calculation function in CCP4 to analyze coordinate file?

2012-02-26 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Wenhe, what you name 'general' may in fact be quite specific and hence running a single program without any options provided is rather unlikely to give the answers you seek. moleman2 and other USF utilities (not a ccp4 program) come closest to w

[ccp4bb] Fwd: [ccp4bb] Membrane Protein Crystallization Plates

2012-02-26 Thread Pius Padayatti
Hi board, Although i do not want to endorse anything personally earlier mail to Yuris response reflects my personal reflection of what i like. Here is a plate from Molecualr dimensions that i found may be an alternate where you can chose the sandwich thickness good idea but do not know what advant

[ccp4bb] Postdoctoral position in structure-function studies of enzymes for biotechnologies

2012-02-26 Thread Jan Dohnalek
DEADLINE APPROACHING! Our group has been involved in structural studies of several novel enzymes interesting from the point of view of biotechnologies, such as Laccase from *S. coeliocolor, *beta-galactosidase from Arthrobacter (660 kDa) or recently plant metal-dependent bifunctional nuclease or b

Re: [ccp4bb] coot with probe and reduce

2012-02-26 Thread Bernhard C. Lohkamp
Dear Raj, please follow exactly what is written in the FAQ http://www.ysbl.york.ac.uk/~lohkamp/coot/wincoot-faq.html#mozTocId860510. I just updated it slightly to hopefully make things even clearer (*). You seem to be mixing different possible setups. Either you move the files to WinCoot\bin

Re: [ccp4bb] CCP4BB Digest - 25 Feb 2012 to 26 Feb 2012 (#2012-58)

2012-02-26 Thread Mark A Saper
Check with Daniel which one he recommends. Mark Saper 3040 & 3250 Chemistry Building Dept of Biological Chemistry sa...@umich.edu 734 764 3353 office 734 276 6505 mobile On Feb 26, 2012, at 7:00 PM, CCP4BB automatic digest system wrote: > There are 8 messages totaling 1732 lines in this iss

[ccp4bb] change in unit cell parameters and difficult MR

2012-02-26 Thread intekhab alam
Hi all I have collected 2 datasets; one for the native proteins (2.3Å resolution) while other is for a protein-protein complex (3.5Å resolution). The unit cell parameters for the native are a=120, b=196, c=109, a=g=90, b=114, while for the complex data it is a=122, b=197, c=300, a=g=90, b=93. I hav