Dear Colleagues,
Further to Herbert's summary, which I support, the publishers allowing
the deposition of their published version/PDF in Institutional
Repositories can be found listed here:-
http://www.sherpa.ac.uk/romeo/PDFandIR.php?la=en
Best wishes,
John
On Thu, Feb 16, 2012 at 6:52 PM, Herbe
REGISTRATION NOW OPEN!!
EMBL Advanced Course: Hybrid Structural Biology Approaches
EMBL Hamburg, Germany
Monday 11 June - Saturday 16 June 2012
Organisers: V.Lamzin (EMBL Hamburg), R. Meijers (EMBL Hamburg), C.Sachse
(EMBL Heidelberg), T.Schneider (EMBL Hamburg), D.Svergun (EMBL Hamburg),
M.W
Bart
>> Diffracted intensity goes up by the cube of the wavelength, but so
>> does absorption and I don't know exactly about radiation damage.
I think this statement should be
"As an approximation, diffracted intensity (integrated) goes up by the square
of the wavelength, but so
does absorbed
Dear all,
I have a structure solved by molecular replacement. The C-terminus at
the end of the chain shows as CO, not COOH. How do I make it into COOH
in COOT? I tried to place an O in the relevant position, but seems not
working this way.
Thanks,
Hubing
There is a button for doing this - add OXT, which if I recall is hidden in the
"other modelling tools" menu.
Tony.
Sent from my iPhone
On 17 Feb 2012, at 10:26, "Hubing Lou" wrote:
> Dear all,
>
> I have a structure solved by molecular replacement. The C-terminus at
> the end of the chain
Dear crystallographers
I would like to get some opinion. For someone beginning to learn basic
crystallography including indexing, scaling ..., should I start with automated
tool like Xia2? Or is manual method for each step better for learning?
Thank you.
Theresa
Dear theresa
xia2 does a great job so it can be used as your reference when processing your
data manually, either for learning or improvement. When comparing different
processing programs and protocols try to judge data quality by some objectice
criteria like HA site identification, anomalous p
Dear Theresa,
My answer would be - it depends.
If you are in the business of learning crystallography, then I would
absolutely suggest you start from doing everything by hand. Indeed, if
you really want to get "stuck in" I would suggest starting with the
programs you need (mosflm, scala, truncate
Hello Teresa,
I need to disagree with Graeme over the idea that ccp4i 'hides' what is
happening. If you care to you can see all the gorey details of command files,
log files etc.. You can run the programs one step at a time and with various
modes with ccp4i and iMosflm and learn something of
Hi
In addition to what Poul and Graeme have said, it may be worthwhile attending
one of the fine protein crystallography schools that are run, where you will
hear lectures on integration & scaling etc that attempt to explain the basics
of what's being done, and probably have a couple of practic
This is actually very true, I simply want to support/enforce Liz's statement by
adding that ccp4i indeed provides for both ends: from elementary scripts,
useful for experts, to a rather large-scale automated processing where
low-level details are not on the front page, which is more useful for a
Dear all,
I have come across an error when trying to run xia2 (version 0.3.3.1) via the
ccp4 gui see below,
#CCP4I TERMINATION STATUS 0 Error from script
/home/applications/CCP4-6.2.0/ccp4-6.2.0/ccp4i/scripts/xia2.script: no files
matched glob pattern "*.log"
#CCP4I TERMINATION TIME 17 Feb 201
After putting up your quote in the lab, a student quickly replied "To do
and fail is to remember and to understand" :-)
On 2/17/12 1:43 PM, Harry Powell wrote:
Hi
In addition to what Poul and Graeme have said, it may be worthwhile attending one
of the fine protein crystallography schools that
Hello all,
I'm trying set up the latest version of HKL-2000 to be able to work with .cbf
files and I get the following error when trying to run it.
~~~
HKL-3000 version 701c3
Checking program versions ...
Error: could not read denzo_3d program version
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Hello Rajintha,
the binary denzo_3d is most likely not compatible with your operating
system / your computer architecture.
Can you send the output of the command
file /usr/local/bin/denzo_3d
issued from the command line? My guess is that this will t
You would hope one learns something from failed experiments.
I feel prehistoric now after Liz comment.
Jürgen
..
Jürgen Bosch
Johns Hopkins Bloomberg School of Public Health
Department of Biochemistry & Molecular Biology
Johns Hopkins Malaria Research Institute
615 North Wolfe
Hi Harry,
Are you advertising our CCP4 Summer School coming up in June at APS?
If not, then I'll shamelessly plug in: http://www.ccp4.ac.uk/schools/APS-school/
And if one visits previous years' school links, there are plenty of lectures
posted.
Thanks,
N.
Ruslan Sanishvili (Nukri), Ph.D.
GM/CA
Dear CCP4ers,
I'd sent this e-mail out a week or so ago. I'm still struggling with the 3D
kit and 2 monitors.
I'd purchased a stereo monitor from Sharper Technology with a Planar SA2311W
stereo 3D LCD and the Nvidia 3D vision kit. However, I'm having a problem
with the dual monitor setup.
Dear Steve,
Thanks for getting in touch. It seems that for some reason the ccp4i
interface to xia2 is not currently working correctly. I will look into
this and get back to you with a fix, it currently has me confused.
Best wishes,
Graeme
On 17 February 2012 12:54, wrote:
> Dear all,
>
> I h
Dear Steve,
There seems to be an error in the xinfo file making logic - if you set
the project and crystal ID at the top of the GUI it works fine. If not
there is an error in the xinfo file which it seems causes xia2 to
silently exit. That's two bugs then.
Thanks again & best wishes,
Graeme
On
Dear CCP4 community,
Although this position requires expertise in NMR spectroscopy, I wanted to
send the announcement to this community as many crystallographers have
colleagues who are NMR spectroscopists that may be interested in this
position. Please feel free to forward to anyone you think may
Hello Rajintha,
> HKL-3000 version 701c3
> Checking program versions ...
> Error: could not read denzo_3d program version.
>
> Program output:
> dyld: unknown required load command 0x8022
>
> In order to manually test the program run command:
> /usr/local/bin/denzo_3d
Apple introduced a compr
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