Re: [ccp4bb] relation between wavelength and inter-atomic distances

I don't have any trouble collecting the few-hundred nm radiation scattered by a very large object (143 000 km) and creating an image, i.e. I can see Jupiter with visible light. If you consider dmin (the "resolution") derives from 2{theta}max, then when 2{theta} is 180 degrees (is any higher an

Re: [ccp4bb] advice

Thanks a lot. Ed Eaton E. Lattman, Ph.D. Dean of Research and Graduate Education Professor of Biophysics Zanvyl Krieger School of Arts and Sciences 410.516.8215 (voice); 410.516.4100 (fax) Mail address: Johns Hopkins University 3400 North Charles Street 237 Mergenthaler Hall Baltimore, MD 21

Re: [ccp4bb] 3 letter code for the Ligand

1) I am working with two ligands, cyclopropanemethanol and cyclobutanemethanol. The 3 letter code for them CPM and CBM (i thought of using) were assigned to other ligands. Is there any standard procedurre to name them. I would like them to use in Refmac and coot. while you refine your structure

Re: [ccp4bb] relation between wavelength and inter-atomic distances

Okay, I am not a physicist, but let's see if we're talking about the same thing. Could it be that the author of this Wikipedia entry is referring to Fraunhofer diffraction rather than Fresnel diffraction? See http://hyperphysics.phy-astr.gsu.edu/hbase/phyopt/fraunhofcon.html and http://hyp

[ccp4bb] Postdoctoral Position - Samsung Biomedical Research Institute

Postdoctoral Position - Protein Crystallography Sungkyunkwan University School of Medicine Samsung Biomedical Research Institute Suwon, Korea A post-doctoral position in protein crystallography is immediately available at Sungkyunkwan University School of Medicine/Samsung Biomedical Researc

Re: [ccp4bb] 3 letter code for the Ligand

On Thu, 25 Jan 2007, S. Shanmuga Sundara Raj wrote: > Hi, > > 1) I am working with two ligands, cyclopropanemethanol > and cyclobutanemethanol. The 3 letter code for them > CPM and CBM (i thought of using) were assigned to > other ligands. Is there any standard procedurre to > name them. I would

[ccp4bb] Installing ccp4 binary in fedora 6

Hi, I installed a ccp4 binary (fedora and redhat version) in a fedora 6 system. And I found out I can not type but only paste text in the ccp4i task window. Is there any quick fix to that? Thanks. Nian

[ccp4bb] Basket case

Dear All, Please could somebody tell me where I can order some new baskets (ie those black things with 10 holes) for the automatic sampling devices used at the ESRF? Many thanks. Matt Dr. Matthew J. Bottomley Senior Research Biophysicist Istituto di

Re: [ccp4bb] Basket case

Hi Matthew, ESRF/EMBL standard baskets, canisters and similar toys for the sample changers can be purchased at Molecular Dimensions Ltd. on their website : http://www.moleculardimensions.com/uk/merchant.ihtml?pid=2519&step=4 Hope it helps, Virgile Bottomley, Matthew a écrit : Dear All, Ple

[ccp4bb] delay in postings

Dear All, we have experienced a slight delay in posting to the bb. This was due to corruption, or excessive size, of the digest file. The solution was for the jiscmail staff to delete or current digest file. This may have the effect that no digests will be posted. Thanks to Donna for f

Re: [ccp4bb] MarView on OSX

Hi Michael, I can run the program under MacOSX (Tiger) PPC from a terminal (had to change permissions): Just type './marView' However, some 'buttons' are not working...like 'File' and 'Options'... but you can browse to an image and view it... Greetings Kristof On 25 Jan 2007, at 23:15, Mic

[ccp4bb] Baskets found.

Thank you all for your suggestions. Matt Dr. Matthew J. Bottomley Senior Research Biophysicist Istituto di Ricerche di Biologia Moleculare, Via Pontina, Km 30.600; 00040 Pomezia (Roma); ITALY. -

[ccp4bb] SUMMARY: ESRF Basket information

Re ESRF sample changing baskets, Just in case other people are interested, below is the most frequently recommended source: Matt Molecular dimensions: ESRF/EMBL standard baskets, canisters and similar toys for the sample changers can be purchased at Molecular Dimensions Ltd. on their website

[ccp4bb] LIMS

Dear all, Does anyone have any suggestions about the best LIMS software to use for keeping track of a project that is generating quite a few structures? Is the CCP4 one available yet? Simon -- Dr. Simon Kolstoe, Research Fellow School of Biological Sci

[ccp4bb] MarView on OSX

Hi Everyone, Has anyone ever run the .mccd diffraction image viewing/editing program "MarView" on Mac OSX? You can download it free form MarResearch (http://www.marresearch.com/), and I can get it to execute fine in Linux, but not on my Mac. The main problem is I can't get the "marView" file

Re: [ccp4bb] Installing ccp4 binary in fedora 6

If you took the tcl-tk-blt binaries provided from our website, for some reason they cause this problem on Fedora core 6. One possible way to solve the problem is to download tcl-tk-blt sources and build blt only (it should then rely on the tcl/tk distribution that comes with Fedora core 6). What

[ccp4bb] refmac message: wrong tree structure... for maltopentaose

Hi, I am having a problem refining a maltopentaose molecule bound in protein with Refmac5. Although that G5 model perfectly fits in the density, the program keeps failing on it and the message is " wrong tree structure. IERR=1". If you happen to see that message before and know how to deal

Re: [ccp4bb] refmac message: wrong tree structure... for maltopentaose

It seems that it already occured for at least another sugar thingy and looks related to a bad description in your sugar dictionary according to this post: http://www.dl.ac.uk/list-archive-public/ccp4bb/2006-07/msg00622.html Virgile fang sheng a écrit : Hi, I am having a problem refining a

Re: [ccp4bb] MarView on OSX

Ok this allows it to attempt to execute but then I get the following error: "dyld: Library not loaded: /sw/lib/libXm.3.dylib Referenced from: /Users/msm/Desktop/marView Reason: no suitable image found. Did find: /sw/lib/libXm.3.dylib: mach-o, but wrong architecture Trace/BPT trap" From

[ccp4bb] S-hexylglutathione

Hi, does anybody know how to prepare a solution of S-hexylglutathione?. I have tried DMSO, DMF, Ethanol and buffer pH7.5 but it was impossible. I know that it is soluble at pH 10.0 but I need it at a concentration 200mM and pH 7.5. Thanks Marian Dr. Marian Oliva-Blanco MRC-LMB Structur

Re: [ccp4bb] MarView on OSX

On 25 Jan 2007, at 23:15, Michael McCormick wrote: Hi Everyone, Has anyone ever run the .mccd diffraction image viewing/editing program "MarView" on Mac OSX? You can download it free form MarResearch (http://www.marresearch.com/), and I can get it to execute fine in Linux, but not on my

[ccp4bb] an automatic molecular replacement pipeline

Dear all, It is an announcement of a beta-release of an automatic molecular replacement system - BALBES. It is available from: www.ysbl.york.ac.uk/~fei/balbes There are tar files for Linux, MacOS (G4/G5) and MacOS (intel). There are instructions how to install and use the system. The system

[ccp4bb] RAxis IIc - free* to a good home

We have an RAxis IIC that has been idle for a couple of years and will clearly not be used in our lab again. We are still using the goniometer and 2-theta stage, but the detector and controller are available to anyone who can pay the shipping costs or preferably pick it up in Philadelphia. Ri

[ccp4bb] Seeking an used MAR 345

We are looking for an used MAR 345 area detector, in good working order. Please contact me off-list ([EMAIL PROTECTED]), to make offers. Prof. Serge Desgreniers Department of Physics University of Ottawa, Canada