Re: [ccp4bb] quaternary structure comparison

2009-06-16 Thread Eugene Krissinel
Dear Eike, depending on what your structure is - you can try interface search in PISA (google on "ebi pisa"). Select the most "representative" interface in your complex (the one that makes the non-standard arrangement) and see whether there are similar interfaces in the PDB. It shouldn't be a too

Re: [ccp4bb] quaternary structure comparison

2009-06-15 Thread Mark J. van Raaij
The human intelligance system "Alexey Murzin" of the LMB in Cambridge comes to mind - helpful and knowledgable about "all" known folds. Mark Quoting Roberto Steiner : Hi Eike, PISA (http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html) or SCOPPI (http://www.scoppi.org ) might be useful. Intere

Re: [ccp4bb] quaternary structure comparison

2009-06-15 Thread Roberto Steiner
Hi Eike, PISA (http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html) or SCOPPI (http://www.scoppi.org ) might be useful. Interested in hearing about other alternatives. Best wishes Roberto On 15 Jun 2009, at 21:28, Eike - Christian Schulz wrote: Dear All, I solved a structure that has a very