Thanks everyone, for the help.
--
Yuri Pompeu
Jalview is another option.
http://www.jalview.org/
Sent from my HTC
- Reply message -
From: "Yuri"
Date: Fri, Aug 19, 2011 00:31
Subject: [ccp4bb] Sequence Alignment Question
To:
UID 23435 BODY[1]<0> {238}
Hello Everyone,
A little off topic but, what is a good way to show (publicatio
Re sequence alignment,
For those TeXnically inclined, TeXshade produces beautiful alignment figures.
(Steep TeX learning curve, I have an example script if anyone wants one).
http://www.ctan.org/pkg/texshade
James
--
Dr. James W. Murray
David Phillips Research Fellow
Division of Molecular Bio
Yuri wrote:
Hello Everyone,
A little off topic but, what is a good way to show (publication
quality) multiple sequence alignment?
I am trying to show conserved regions in related proteins from
different organisms.
Thank you
--
Yuri Pompeu
or clustalw, e.g.
http://npsa-pbil.ibcp.fr/cgi-bin/ali
Use ALINE sequence editor. if you multiple sequence alignment file from
clustalW, you can open in ALINE software and generate publication quality of
image.
http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/
--- On Thu, 18/8/11, Yuri wrote:
From: Yuri
Subject: [ccp4bb] Sequence Alignm
You can try this site:
http://espript.ibcp.fr/ESPript/cgi-bin/ESPript.cgi
If you have .pdb for one of your sequences, you'll be able to show secondary
structure also.
vitali
On Thu, Aug 18, 2011 at 6:31 PM, Yuri wrote:
> Hello Everyone,
> A little off topic but, what is a good way to show (pub
