Dear Martin,
Here you are!
I cannot fin the diagnostics.xml
Armando
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Dear Armando,
Please run this in your command line (when CCP4 paths are loaded)
coot --no-state-script --python --script
/Users/xalbert/Armando/0_1_Current/SOS3_Alejandra/Bsk5486x12/Refine_new/CCP4_JOBS/job_8/script.py
Does a Coot window open? Send us an output which will be in terminal please
OK.
So could we see:
/Users/xalbert/Armando/0_1_Current/SOS3_Alejandra/Bsk5486x12/Refine_new/CCP4_JOBS/job_8/log.txt
?
That should be Coot's log file.
Stuart
On Tue, 19 Nov 2024 at 09:34, Armando Albert wrote:
>
> Yes, it does
> Armando
>
> > El 19 nov 2024, a las 10:31, Stuart McNicholas
Yes, it does
Armando
> El 19 nov 2024, a las 10:31, Stuart McNicholas
> escribió:
>
> Dear Armando,
> Many apologies. Does coot run outside of ccp4i2?
>
> i.e. does the following in a Terminal work OK:
>
> /Applications/ccp4-9/start
> coot
>
> ?
>
> If it does we'll have to try some other
Dear Armando,
Many apologies. Does coot run outside of ccp4i2?
i.e. does the following in a Terminal work OK:
/Applications/ccp4-9/start
coot
?
If it does we'll have to try some other tests. If it does not work, is
XQuartz installed?
Best wishes,
Stuart
On Tue, 19 Nov 2024 at 08:25, Armand
Dear Armando,
If a job fails, there should be also shown files diagnostics.xml,
stderr.txt and stdout.txt. Please can you send them to us here?
Cheers,
Martin
On 19/11/2024 08:25, Armando Albert wrote:
Dear all,
I am trying to run coot from CCP4i2 and I’ve got the following message:
Error R
