Hi Paul,
You have probably solved this already, but in case you are interested I
have written a script to superpose AlphaFold models using PDBe mmCIF
annotations, AlphaFold DB and Gemmi (link below), as I had already done
something similar in a previous project. It is probably better to use
3D-Bea
Or you can go straight to uniprot. Every available PDB + alphafold model
is linked to the uniprot entry.
On Fri, Jul 29, 2022 at 4:46 PM Robbie Joosten
wrote:
> Hi Paul,
>
> From the PDB file get the Uniprot primary accession code (see DBREF) and
> use this to get the Alphafold model using 3D-b
Hi Paul,
From the PDB file get the Uniprot primary accession code (see DBREF) and use
this to get the Alphafold model using 3D-beacons
(https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/).
You can also use 3D-beacons to get the related AlphaFill model (just saying...).
Cheers,
Robbie
> -Origina
