Hi Paul, From the PDB file get the Uniprot primary accession code (see DBREF) and use this to get the Alphafold model using 3D-beacons (https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/). You can also use 3D-beacons to get the related AlphaFill model (just saying...).
Cheers, Robbie > -----Original Message----- > From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> On Behalf Of Paul > Emsley > Sent: Friday, July 29, 2022 20:31 > To: CCP4BB@JISCMAIL.AC.UK > Subject: [ccp4bb] PDB to AlphaFold via Uniprot > > I wonder if others are curious about (or know how to solve) the > following problem: > > I am looking at a PDB file that I've downloaded from a wwPDB site and I > would like to see the AlphaFold model(s) overlaid. What the best (or > easiest) way of doing that? (let's imagine that I can do a bit of > scripting in python (including urllib) and can use the functions in Coot > for the superposition). > > Thanks, > > Paul. > > ################################################################### > ##### > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing > list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
