Re: [ccp4bb] sequential renumbering of a messed up pdb file

It is an absolute pain! do you mean you have residue 1 A 1A 2A 2A 3A 3A etc where they should be numbered 1 2 3 4 5 6 A? or should it be 1A 1B 2A 2B 3A 3B etc? Eleanor William Scott wrote: Hi folks: I am hoping there is a simple answer I have overlooked to the following question. I have

Re: [ccp4bb] sequential renumbering of a messed up pdb file

Dear Martin et al: This, along with some scripting in coot and my favorite shell (zsh), did the trick. Many thanks to all who replied, and apologizes for what in retrospect must have been a very poorly-worded question. Maybe this functionality can be incorporated in the next release of

Re: [ccp4bb] sequential renumbering of a messed up pdb file

bookkeeping for new_chain_id and new_resseq. Ralf - Original Message From: William Scott <[EMAIL PROTECTED]> To: CCP4BB@JISCMAIL.AC.UK Sent: Thursday, July 31, 2008 4:09:11 PM Subject: [ccp4bb] sequential renumbering of a messed up pdb file Hi folks: I am hoping there is a simple answer

Re: [ccp4bb] sequential renumbering of a messed up pdb file

They are adjacent. On Jul 31, 2008, at 4:47 PM, Abhinav Kumar wrote: I have a program that can fix it provided the residues with same number are not adjacent in the pdb file. Please let me know and I can send you the program. Thanks Abhinav Abhinav Kumar JCSG @ SSRL, MS 99 2575 Sand Hil

Re: [ccp4bb] sequential renumbering of a messed up pdb file

I have a program that can fix it provided the residues with same number are not adjacent in the pdb file. Please let me know and I can send you the program. Thanks Abhinav Abhinav Kumar JCSG @ SSRL, MS 99 2575 Sand Hill Road Menlo Park, CA 945025-7015 Phone: 650 926 2992 Fax: 650 926 3292

Re: [ccp4bb] sequential renumbering of a messed up pdb file

--Original Message- From: William Scott <[EMAIL PROTECTED]> To: CCP4BB@JISCMAIL.AC.UK Sent: Thu, 31 Jul 2008 5:09 pm Subject: [ccp4bb] sequential renumbering of a messed up pdb file Hi folks:? ? I am hoping there is a simple answer I have overlooked to the following question. I

Re: [ccp4bb] sequential renumbering of a messed up pdb file

nt: Thursday, July 31, 2008 6:09 PM Subject: [ccp4bb] sequential renumbering of a messed up pdb file Hi folks: I am hoping there is a simple answer I have overlooked to the following question. I have a pdb file in it that has multiple residues that have the same number and chain ID, and I

[ccp4bb] sequential renumbering of a messed up pdb file

Hi folks: I am hoping there is a simple answer I have overlooked to the following question. I have a pdb file in it that has multiple residues that have the same number and chain ID, and I want to force them to be renumbered sequentially. Is there a simple way to do so (eg, pdbset) or a