Dear Sreetama,
ProFit (http://www.bioinf.org.uk/software/profit/) does the RMS-by-residue
calculation for multiple chain superposition.
Avinash Punekar
On Feb 21, 2012, at 4:00 PM, sreetama das wrote:
Is there any software which will print the RMSDs (residue
wise, and not chain wise) for more-than-2 chains (having similar/
same sequences) superposed together?
In UCSF Chimera you can use the Match->Align tool to create a
structu
Dear Sreetama,
theseus can superpose multiple structures and reports RMSD per residue.
http://www.theseus3d.org/
If your sequences are not identical and you want least squares
superposition, run it like this:
theseus_align -l -f *.pdb
This will produce several output files. The file "theseu
Dear all,
Is there any software which will print the RMSDs (residue wise, and
not chain wise) for more-than-2 chains (having similar/same sequences)
superposed together?
Thanks in advance,
sreetama
