Hi Stuart,
If the wait til Python3 is the issue, surely we are close to pushing the
trigger ?
Are we confident that other things (like fortran libraries and ad-hos python
and shell scripts) are good to go ?
M.
Sent from my iPad
On 18 Nov 2020, at 10:13, Stuart McNicholas
wrote:
Possibly
Possibly. But i2 itself cannot be fully international until Python3, since
sqlite in Python2 does not support unicode. Unless we drop sqlite, of
course, but there will be other libraries that cause problems.
On Wed, 18 Nov 2020 at 09:44, Martin Noble
wrote:
> Thanks Stuart,
>
> Of course, since
Thanks Stuart,
Of course, since we ar enow in teh 21st Century, maybe we should make these
problems go away, if necessaryby dropping those elements of the suite that
can’t handle international, modeern scientists ?
Sent from my iPad
On 18 Nov 2020, at 09:20, Stuart McNicholas
wrote:
Yes,
Yes, Martin, we should. I think we're catching and warning about non-ASCII
now. I'll check if whitespace is in the check as well, and if not add it.
On Wed, 18 Nov 2020 at 09:12, Martin Noble
wrote:
> Should be caught in ccp4.setup-sh ? Or in ccp4i2 launch binary ?
>
>
> Sent from my iPad
>
> On
Should be caught in ccp4.setup-sh ? Or in ccp4i2 launch binary ?
Sent from my iPad
On 17 Nov 2020, at 13:13, Stuart McNicholas
<19a0c5f649e5-dmarc-requ...@jiscmail.ac.uk> wrote:
⚠ External sender. Take care when opening links or attachments. Do not provide
your login details.
Dear Kev
Dear Kevin,
Glad you worked it out. Sorry I missed earlier messages. This is another
common Windows problem - not just spaces either, but anything not ASCII
alphanumeric is likely to cause problems.
Stuart
On Tue, 17 Nov 2020 at 12:54, Kevin Cowtan <
2ba34e97fcaf-dmarc-requ...@jiscmail.ac.
Hi all
The problem turned out to be that the user had a space in their username.
Creating a new account solved it.
Regards,
On Tue, 17 Nov 2020 at 10:23, Kevin Cowtan wrote:
> Hi!
>
> I have a student trying to run i2, and a task to import merged data from
> cif which works fine for the other
That sort of thing works for me
1. Can you try running Pointless from the command line on the same file?
2. Failing that, can you send me the input file to Pointless to see why
Pointless is failing
Phil
> On 17 Nov 2020, at 10:23, Kevin Cowtan
> <2ba34e97fcaf-dmarc-requ...@jiscmail.ac.uk>
Dear Kevin,
It sometimes helps (for reasons unknown) to run i2 as an administrator
once on Windows. Having said that, there may well be a pointless bug or
compiler error which only manifests on some CPUs/Windows version, etc. But
I'd try the run as admin idea first, if it's possible. If it's not
Hi!
I have a student trying to run i2, and a task to import merged data from
cif which works fine for the other students is failing at the pointless
step.
The logfiles are identical up to pointless (apart from the random free-R
flag assignment), but the problem occurs in pointless. The log file o
____
>> From: Eleanor Dodson [eleanor.dod...@york.ac.uk]
>> Sent: Saturday, 21 January 2017 1:07 PM
>> To: Joseph Brock
>> Cc: CCP4BB@JISCMAIL.AC.UK
>> Subject: Re: [ccp4bb] POINTLESS error: "NormaliseInRuns::apply Unused run 0"
>>
>> can you s
n [eleanor.dod...@york.ac.uk]
>Sent: Saturday, 21 January 2017 1:07 PM
>To: Joseph Brock
>Cc: CCP4BB@JISCMAIL.AC.UK
>Subject: Re: [ccp4bb] POINTLESS error: "NormaliseInRuns::apply Unused run 0"
>
>can you send the whole log file?
>Somehow the XDS input isnt agreeing wi
Biophysics
Karolinska Institutet
Scheeles väg 2
SE-171 77 Stockholm, Sweden
From: Eleanor Dodson [eleanor.dod...@york.ac.uk]
Sent: Saturday, 21 January 2017 1:07 PM
To: Joseph Brock
Cc: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] POINTLESS error: "NormaliseI
can you send the whole log file?
Somehow the XDS input isnt agreeing with pointless expectations, so I
suspect no reflections have been read
Eleanor
On 20 January 2017 at 23:41, Joseph Brock wrote:
> Dear ccp4 experts,
>
> I am trying to use the ccp4i Pointless, Aimless, Ctruncate application to
Dear ccp4 experts,
I am trying to use the ccp4i Pointless, Aimless, Ctruncate application to
convert a XDS.HKL file. This usually works fine, however I suddenly have the
task immediately fail with the error message below pasted from the bottom of
the logfile.
If anyone can translate this error
Thanks
> Rajesh
>
> Date: Tue, 15 Nov 2011 09:17:34 -0500
> From: ccp4...@hotmail.com
> Subject: [ccp4bb] pointless error
> To: CCP4BB@JISCMAIL.AC.UK
>
> Dear all,
>
> mtzdump shows my space group as 'C 2 2 21' (number 20)
> pointless gives error "
probably get more from the unmerged data
ThanksRajesh
Date: Tue, 15 Nov 2011 09:17:34 -0500
From: ccp4...@hotmail.com
Subject: [ccp4bb] pointless error
To: CCP4BB@JISCMAIL.AC.UK
Dear all,
mtzdump shows my space group as 'C 2 2 21' (number 20)
pointless gives error "Spa
Dear all,
mtzdump shows my space group as 'C 2 2 21' (number 20)
pointless gives error "Space group is not in library". part of the log file is
following.
I appreciate all the help.
Thanks
Raj
**
*
at the MRC ftp site to see if you can get
>>>> the
>>>> same binary:
>>>>
>>>> ftp://ftp.mrc-lmb.cam.ac.uk/pub/pre
>>>>
>>>> Cheers,
>>>>
>>>> Graeme
>>>>
>>>> -Origi
t;>>
>>> Cheers,
>>>
>>> Graeme
>>>
>>> -Original Message-
>>> From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of
>>> David Briggs
>>> Sent: 23 May 2008 10:13
>>> To: C
>> -Original Message-
>> From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of
>> David Briggs
>> Sent: 23 May 2008 10:13
>> To: CCP4BB@JISCMAIL.AC.UK
>> Subject: [ccp4bb] Pointless Error.
>>
>> Morning all...
>>
>> I
Of
> David Briggs
> Sent: 23 May 2008 10:13
> To: CCP4BB@JISCMAIL.AC.UK
> Subject: [ccp4bb] Pointless Error.
>
> Morning all...
>
> I've just downloaded the newest version of pointless, 1.2.15, using the
> mac osx intel binary.
>
> When I try a
PROTECTED] On Behalf Of
David Briggs
Sent: 23 May 2008 10:13
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Pointless Error.
Morning all...
I've just downloaded the newest version of pointless, 1.2.15, using the
mac osx intel binary.
When I try and run it through the gui, it seems that my child get
Morning all...
I've just downloaded the newest version of pointless, 1.2.15, using
the mac osx intel binary.
When I try and run it through the gui, it seems that my child gets hit
by some sort of bus error:
***
* Informatio
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