Re: [ccp4bb] omit map

Dear Rohit Kumar Singh, the ccp4 gui offers 'Calculate Omit Map' and 'Calculate Composite Omit Map' from the 'Map & Mask Utilities' menu. Neither GUI askes for much input and should be run with much further ado. Regards, Tim On Thu, Nov 27, 2014 at 07:05:09PM +0530, rohit kumar wrote: > dear a

[ccp4bb] omit map

dear all, can any one tell me how to calculate omit map in ccp4?. -- WITH REGARDS Rohit Kumar Singh Lab. no. 430, P.I. Dr. S. Gourinath, School of Life Sciences, Jawaharlal Nehru University New Delhi -110067

Re: [ccp4bb] omit map calculation in CCP4

sadaf iqbal wrote: Hello everyone, Do anybody know the correct procedure for calculating omit map in CCP4, if one need to reduce the bias from the Molecular Replacement structure. I am confused about the two options, one is fft map calculation while the other is OMIT map calculation in Map &

[ccp4bb] omit map calculation in CCP4

Hello everyone, Do anybody know the correct procedure for calculating omit map in CCP4, if one need to reduce the bias from the Molecular Replacement structure. I am confused about the two options, one is fft map calculation while the other is OMIT map calculation in Map & Mask Utilities window

Re: [ccp4bb] OMIT map from Sfcheck

te: 4 April 2008 11:33:56 GMT+02:00 To: Jovine Luca <[EMAIL PROTECTED]> Cc: CCP4BB@jiscmail.ac.uk Subject: Re: [ccp4bb] OMIT map from Sfcheck Please try to use sfcheck binaries or source code from my home page: http://www.ysbl.york.ac.uk/~alexei/sfcheck.html Regards Alexei Hopefully upda

Re: [ccp4bb] OMIT map from Sfcheck

my model has 1600 atoms. the memory allocation for the linux (worked) and OS X (failed) binaries is the same: Sol_ Sol_ - Sol_ --- SFCHECK --- /Vers 7.2.02; 01.10.2006/ - Sol_ Memory:

Re: [ccp4bb] OMIT map from Sfcheck

Please try to use sfcheck binaries or source code from my home page: http://www.ysbl.york.ac.uk/~alexei/sfcheck.html Regards Alexei On 4 Apr 2008, at 09:58, Jovine Luca wrote: On 4 Apr 2008, at 01:36, Michael Giffin wrote: i get the same error on OS X 10.5.2 and 10.4.11: sfcheck -f refm

Re: [ccp4bb] OMIT map from Sfcheck

On 4 Apr 2008, at 01:36, Michael Giffin wrote: i get the same error on OS X 10.5.2 and 10.4.11: sfcheck -f refmac2.mtz -m refmac2.pdb -out y -nomit 2 -map the error: Open failed: Unit: 11, File: sfcheck_scr.dat (logical: sfcheck_scr.da

Re: [ccp4bb] OMIT map from Sfcheck

i get the same error on OS X 10.5.2 and 10.4.11: >sfcheck -f refmac2.mtz -m refmac2.pdb -out y -nomit 2 -map the error: Open failed: Unit: 11, File: sfcheck_scr.dat (logical: sfcheck_scr.dat) Last system error message: Bad file descriptor C

[ccp4bb] OMIT map from Sfcheck

Dear, I'm intending to make an OMIT map using Sfcheck (ccp4i 6.0.2, Mac OS X Tiger, PPC). However, the program terminates with: "has failed with error message 1525-005 1525-005 1525-005 1525-005 1525-005 1525-005 " When using 'command line' from a script (with '-nomit 2 -map -origin - out y

Re: [ccp4bb] omit map on OMIT ccp4 program

[EMAIL PROTECTED] * - Original Message - From: Taiana Oliveira To: CCP4BB@JISCMAIL.AC.UK Sent: Monday, 05 February, 2007 2:52 PM Subject: [ccp4bb] omit map on OMIT ccp4 program Hi everyone!! Does anybody have a example script for OMIT? The sc

[ccp4bb] omit map on OMIT ccp4 program

Hi everyone!! Does anybody have a example script for OMIT? The script link present on http://www.ccp4.ac.uk/html/omit.html leads to nowhere... I really appreciate your help! Sincerely, -- Taianá Maia de Oliveira Laboratório de Moléculas Biologicamente Ativas - Biomol-lab Departamento de Bioquím

Re: [ccp4bb] OMIT MAP

89902149 e-mail : [EMAIL PROTECTED] * - Original Message - From: Bruno Matias To: CCP4BB@JISCMAIL.AC.UK Sent: Thursday, 01 February, 2007 3:19 PM Subject: [ccp4bb] OMIT MAP Hi, Does anyone know how calculate omit maps in CCP4? I tried to find Omit

[ccp4bb] OMIT MAP

Hi, Does anyone know how calculate omit maps in CCP4? I tried to find Omit in CCP4 program list, but I did not find it. I am using CCP4 Program Suite 6.0.1.