Hi Tassos,
I very much like Homolmapper:
http://www.mcb.ucdavis.edu/faculty-labs/lagarias/homolmapper_home/homolmapper%20web%20page.htm
You can map several conserved properties onto your structures, not
just plain sequence.
Best,
Miguel
Le 29 janv. 09 à 22:25, Anastassis Perrakis a écrit
I like the consurf coloring scheme the best. I forget things so I had to write
down the instructions which I copied off of some website which I can't seem to
find at the moment. The other program is ESPript which I've also included my
cheat sheet.
Mapping conservation onto your structure (C
Dear All,
Thanks to all that replied in private and in the bb!
Answers are and will be 'permanently' summarized at:
http://strucbio.biologie.uni-konstanz.de/ccp4wiki/
http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Mapping_sequence_alignment_to_a_structure
(a nice opportunity to c
AL2CO ( http://www.ncbi.nlm.nih.gov/pubmed/11524371 ) may be what you need.
It takes the multiple alignment (made by user, so it isn't a black box)
that must contain the sequence of your structure, and maps the positional
conservation in the B-factor column of the structure. To see whether this
On Thu, Jan 29, 2009 at 1:25 PM, Anastassis Perrakis wrote:
> Dear all,
> I was wondering what is the state of the art for this old dark art ... are
> there any good servers / programs that allow to easily upload your own
> sequence alignments or create a 'transparent' alignment (I want to see th
Dear all,
I was wondering what is the state of the art for this old dark art ...
are there any good servers / programs that allow to easily upload your
own sequence alignments or create a 'transparent' alignment (I want to
see the alignment first and not a total black box) and then allow yo
