Hi Tassos,
I very much like Homolmapper:
http://www.mcb.ucdavis.edu/faculty-labs/lagarias/homolmapper_home/homolmapper%20web%20page.htm
You can map several conserved properties onto your structures, not
just plain sequence.
Best,
Miguel
Le 29 janv. 09 à 22:25, Anastassis Perrakis a écrit :
Dear all,
I was wondering what is the state of the art for this old dark
art ... are there any good servers / programs that allow to easily
upload your own sequence alignments or create a 'transparent'
alignment (I want to see the alignment first and not a total black
box) and then allow you to write out sequence conservation based
either on identity or in e.g a Dayhoff matrix on the B factor column
for displaying it later in eg Pymol?
To be clear I do not want a structural alignment, but mapping
sequence alignment of eg a family to a single structure of a family
member.
Thanks in advance, Tassos
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Miguel Ortiz Lombardía
Architecture et Fonction des Macromolécules Biologiques
UMR6098 ( CNRS, U. de Provence, U. de la Méditerranée )
Case 932
163 Avenue de Luminy
13288 Marseille cedex 9
France
Tel : +33(0) 491 82 55 93
Fax: +33(0) 491 26 67 20
e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr
Web: http://www.pangea.org/mol/spip.php?rubrique2
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