Re: [ccp4bb] Insoluble ligand?

2011-09-19 Thread Herman . Schreuder
CP4BB@JISCMAIL.AC.UK] On Behalf Of Chaudhary, Ritcha Sent: Friday, September 16, 2011 6:05 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Insoluble ligand? Hi All I have a ligand that is dissolved in 100% DMSO. The ligand crashes out even when diluted to 20% final DMSO concentration in the protein b

Re: [ccp4bb] Insoluble ligand?

2011-09-16 Thread Roger Rowlett
Keep in mind it may also be possible to soak in ligand from the solid if the binding constant is tight enough. Le Chatelier's principle will drag it from the undissolved solid into the complex. This process will be improved if you can increase solubility in soluti

Re: [ccp4bb] Insoluble ligand?

2011-09-16 Thread Smita Mohanty
Hi Ritcha, Did you try Methanol or Ethanol to see if your ligand dissolve in these solvents? You should try these solvents first before adding any detergents. Good luck. Smita Mohanty >>> "Chaudhary, Ritcha" 9/16/2011 11:04 AM >>> Hi All I have a ligand that is dissolved in 100% DMSO. The l

[ccp4bb] Insoluble ligand?

2011-09-16 Thread Chaudhary, Ritcha
Hi All I have a ligand that is dissolved in 100% DMSO. The ligand crashes out even when diluted to 20% final DMSO concentration in the protein buffer. I have heard of people using detergents such as n octyl Beta D glucoside to keep the ligand solubilized at lower DMSO concentrations. Can someon

Re: [ccp4bb] insoluble ligand

2007-12-12 Thread Kendall Nettles
Simon, We routinely obtain structures from protein solutions with a big pellet of ligand in the bottom of the tube. For co-crystallizations we add 1mM compound to a 0.3mM solution of the protein and incubate overnight. Many of the compounds are only soluble to 50micromolar, so we get a lot of pre

Re: [ccp4bb] insoluble ligand

2007-12-12 Thread marco . mazzorana
Dear Simon, DMSO concentrations lower than 5% usually do not alter crystallizability of a protein. In case you want to avoid this solvent may I suggest you trying out two methods that worked for me. 1. If you grow crystals in PEGs or similar molecules you might try to solubilize the compound in a

Re: [ccp4bb] insoluble ligand

2007-12-12 Thread Robert Hussey
> HTH > > Carsten > > > > > -Original Message- > > From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] > > Behalf Of Yue Li > > Sent: Tuesday, December 11, 2007 11:55 AM > > To: CCP4BB@JISCMAIL.AC.UK > > Subject: [ccp4bb] insoluble ligand &

Re: [ccp4bb] insoluble ligand

2007-12-11 Thread David Briggs
> > > > > -Original Message- > > From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] > > Behalf Of Yue Li > > Sent: Tuesday, December 11, 2007 11:55 AM > > To: CCP4BB@JISCMAIL.AC.UK > > Subject: [ccp4bb] insoluble ligand > > > > > &g

Re: [ccp4bb] insoluble ligand

2007-12-11 Thread Schubert, Carsten [PRDUS]
Li > Sent: Tuesday, December 11, 2007 11:55 AM > To: CCP4BB@JISCMAIL.AC.UK > Subject: [ccp4bb] insoluble ligand > > > Hi all, > > I have one ligand which is insoluble in water, and I would like to > co-crystallize it with my protein. Is there any other method > except f

[ccp4bb] insoluble ligand

2007-12-11 Thread Yue Li
Hi all, I have one ligand which is insoluble in water, and I would like to co-crystallize it with my protein. Is there any other method except for dissolving it in DMSO ? Thanks Simon