Re: [ccp4bb] crashing-out protein eluted from Nickel column

2008-02-20 Thread Vangelis Christodoulou
Hi Juliana, Since you can purify some protein with IMAC, I suggest that you do a buffer screening with Thermofluor before running the desalting column (or gel filtration column) and use the buffer condition(s) that stabilise your protein for the next purification step and possibly freezin

Re: [ccp4bb] crashing-out protein eluted from Nickel column

2008-02-19 Thread price
An added benefit of EDTA is that it inhibits some proteases - for one of our wimpier proteins, spiking each fraction collector tube with a little EDTA before running the Ni column really helped reduce keep the sample in one piece. Phoebe At 01:18 PM 2/19/2008, Sophia Tsai wrote: Hi,

Re: [ccp4bb] crashing-out protein eluted from Nickel column

2008-02-19 Thread Sophia Tsai
Hi, Agreed on this. I used to have issues with aggregation due to the Nickel being stripped off the column (happens with elution in imidazole). Adding 10mM EDTA to the elution immediately AFTER it has come out of the column will chelate the Ni++ and prevents aggregation (at least in my case). Afte

Re: [ccp4bb] crashing-out protein eluted from Nickel column

2008-02-18 Thread Nadir T. Mrabet
Hi, One has to bear in mind that adsorption at high pH (above 6.5 is already high for Imac; pKa of exposed His is 6.2) leads to stronger interactions which, in turn, require stronger eluting conditions, e.g. > 200 mM imidazole (pKa ~ 7.0). I suggest lowering the pH of the adsortion buffer, e.g

Re: [ccp4bb] crashing-out protein eluted from Nickel column

2008-02-18 Thread Ngo Duc Tri
Hi, I used another way to deal with this problem. You can try to elute your protein with the buffer containing 50mM EDTA (You need at least 10CV to elute completely). Then use gel filtration to remove the Ni. I applied this method with two proteins and it showed good results. Good luck! TriNgo --

Re: [ccp4bb] crashing-out protein eluted from Nickel column

2008-02-18 Thread Ronnie Berntsson
Hi, In addition to the tips already suggested, you could also try to elute your protein with histidine.. I've got a protein that crashes out with imidazole as well, and I have succesfully used 200mM histidine for elution (using either KPi or MES buffer in my case). Cheers, Ronnie On Feb

Re: [ccp4bb] crashing-out protein eluted from Nickel column

2008-02-15 Thread Antony Oliver
Firstly - please forgive my last 'blank' message - comes of trying to e-mail whilst travelling on a train! I would suggest that you change the affinity tag that you're purifying with. Go with either a GST or Strep-tag. That way you are avoiding the imidazole that is obviously causing problems wi

Re: [ccp4bb] crashing-out protein eluted from Nickel column

2008-02-15 Thread Antony Oliver
-- Dr Antony W Oliver Cancer Research UK: DNA Repair Enzymes Group Section of Structural Biology The Institute of Cancer Research 237 Fulham Road LONDON SW3 6JB [EMAIL PROTECTED] 020 7153 5488 -- >>> Juergen Bosch <[EMAIL PROTECTED]> 02/15/08 5:23 PM >>> Not sure if somebody mentioned it already,

Re: [ccp4bb] crashing-out protein eluted from Nickel column

2008-02-15 Thread Juergen Bosch
Not sure if somebody mentioned it already, but have you played with other buffers than the recommended sodium phosphate from the manual ? Most lazy people use Tris because there's a 1 M stock solution - but you can try also other buffers as long as you stay in a pH range >pH6 Of course you sti

[ccp4bb] crashing-out protein eluted from Nickel column

2008-02-15 Thread Juliana Barbosa Coitinho
Dear all, I am with the same problem of Jacob. My protein is precipitating, especially when I 'freeze it'. I am using a His Trap HP column coupled with a desalting column. Already tried to elute with gradient of imidazole (that allowed an elution with less amount of imidazole), but even then, t