Re: [ccp4bb] comparison of different protein states

2017-02-02 Thread Grishin, Andrey
ough). Cheers, Boaz Original message From: Guillermo Montoya mailto:guillermo.mont...@cpr.ku.dk>> Date: 01/02/2017 07:40 (GMT+02:00) To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> Subject: [ccp4bb] comparison of different protein states Dear all, first of all

Re: [ccp4bb] comparison of different protein states

2017-02-01 Thread Guillermo Montoya
heers, Boaz Original message From: Guillermo Montoya mailto:guillermo.mont...@cpr.ku.dk>> Date: 01/02/2017 07:40 (GMT+02:00) To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> Subject: [ccp4bb] comparison of different protein states Dear all, first of all sorry for

Re: [ccp4bb] comparison of different protein states

2017-02-01 Thread Debanu
mentioned it'll superpose extremely well > on the other ''apo'' structure. This should satisfy the referee I would think > (it's not me though). > Cheers, > Boaz > > > Original message > From: Guillermo Montoya > Da

Re: [ccp4bb] comparison of different protein states

2017-02-01 Thread Boaz Shaanan
(it's not me though). Cheers, Boaz Original message From: Guillermo Montoya Date: 01/02/2017 07:40 (GMT+02:00) To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] comparison of different protein states Dear all,  first of all sorry for this off-topic question. I am reques

[ccp4bb] Fwd: Re: [ccp4bb] comparison of different protein states

2017-02-01 Thread F.Xavier Gomis-Rüth
e apo form with unbound form throughout the text except when dealing with forms lacking the catalytic zinc ion. Best regards, Xavier Forwarded Message Subject: Re: [ccp4bb] comparison of different protein states Date: Tue, 31 Jan 2017 22:23:27 -0800 From: Deban

Re: [ccp4bb] comparison of different protein states

2017-01-31 Thread Debanu Das
Dear Guillermo, I think the referee has a point because you are comparing two different proteins to propose a model of 2 states even though the enzymes are highly similar with conservation of key features. With 40% id/60% similarity, even if core domain structure and length are conserved, there ar

[ccp4bb] comparison of different protein states

2017-01-31 Thread Guillermo Montoya
Dear all, first of all sorry for this off-topic question. I am requesting your help to find some papers to convince one referee about the comparison of two different protein states. In our manuscript we show the crystal structure of an enzyme. This structure represents the enzyme after catalysi