On Feb 2, 2009, at 11:39, Clemens Vonrhein wrote:
Hi Tassos,
On Mon, Feb 02, 2009 at 11:13:28AM +0100, Anastassis Perrakis wrote:
To be more detailed I would:
0. Put the mol rep solution in ARP/wARP and let it run (in the
meantime
proceed to 1-3 if 0. fails ...)
^^^
You didn
Hi Tassos,
On Mon, Feb 02, 2009 at 11:13:28AM +0100, Anastassis Perrakis wrote:
> To be more detailed I would:
>
> 0. Put the mol rep solution in ARP/wARP and let it run (in the meantime
> proceed to 1-3 if 0. fails ...)
^^^
You didn't tell us what point 1 is:
> 2. Do some density
Hi -
With good 2.0 A data (as you seem to have) and a correct solution,
I would be rather surprised if ARP/wARP - REFMAC5 would not refine and
build a model without major trouble.
Did you try that at all ?
To be more detailed I would:
0. Put the mol rep solution in ARP/wARP and let it run (i
Hi Xie,
> Many thanks to all who responded to my earlier query (Drs. Paul
> Swepston, Randy Read and Nicholas Glykos). I am trying to determine the
> structure of a very long coiled coil dimer (roughly 150 residues long)
> by molecular replacement. I don't know if it forms a canonical coiled
partial structure is available?
Xie
--- On Sat, 1/24/09, Randy J. Read wrote:
From: Randy J. Read
Subject: Re: [ccp4bb] brute force molecular replacement
To: CCP4BB@JISCMAIL.AC.UK
Date: Saturday, January 24, 2009, 8:37 PM
Hi,
If you were desperate for BRUTE, I could probably dig out
That may be so, but I'm still grappling with the visual of a younger Ian
on all fours under the table -- or whatever it was, I deleted the email
but the visual lingers, morphing disturbingly).
phx.
Nicholas M Glykos wrote:
Dear Jacob,
Why is it called "queen of spades?"
As it ha
Dear Jacob,
> Why is it called "queen of spades?"
As it happened, I was reading Alexander Pushkin's "Queen of Spades" while
writing Qs. The book touches upon the subject of how close you can get to
win everything and still lose it all. I thought that this was relevant for
a stochastic search,
.@jiscmail.ac.uk] On Behalf Of Jacob Keller
> Sent: 26 January 2009 17:30
> To: CCP4BB@JISCMAIL.AC.UK
> Subject: Re: [ccp4bb] brute force molecular replacement
>
> Why is it called "queen of spades?"
>
> JPK
>
> ***
>
il: j-kell...@northwestern.edu
***
- Original Message -
From: "Nicholas M Glykos"
To:
Sent: Sunday, January 25, 2009 9:14 AM
Subject: Re: [ccp4bb] brute force molecular replacement
Dear Xie,
What are the other brute force programs for molec
Dear Xie,
> What are the other brute force programs for molecular replacement out
> there?
Qs (available via http://www.mbg.duth.gr/~glykos/Qs.html) can be as brutal
with your CPU(s) as they can take.
Nicholas
--
Dr Nicholas M. Glykos, Department of Molecular
Biology
Hi,
If you were desperate for BRUTE, I could probably dig out the source code.
My somewhat newer program BEAST also does a brute-force search, and you
could get that by downloading an older version of CCP4 or, again, directly
from me.
Our new program Phaser also has brute-force rotation and
Dear all,
>From where can I download the molecular replacement program BRUTE? What are
>the other brute force programs for molecular replacement out there?
Thanks in advance,
Xie
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