Dear Manoj,
I usually utilize SALIGN to produce structure-based sequence alignments:
https://modbase.compbio.ucsf.edu/salign/
Ciao
Pietro
On 02-03-2023 08:45, Manoj N wrote:
Dear all,
We want to generate a structure-based multiple
sequence alignment for a large number of hom
Hi Manoj
If the structures are in the PDB, then PDB-KB may have already done the work
for you -
https://www.ebi.ac.uk/pdbe/pdbe-kb/
They run Gesamt on homologous structures for the whole PDB every week (as I
understand it).
Harry
> On 2 Mar 2023, at 07:45, Manoj N wrote:
>
> Dear
structure-based multiple sequence alignment
Dear all,
We want to generate a structure-based multiple sequence
alignment for a large number of homologous structures (>100).
What are the available programs (stand-alone or webserver) to do this?
Thank you,
Best wishes,
Ma
] Tools for structure-based multiple sequence alignment
Dear all,
We want to generate a structure-based multiple sequence
alignment for a large number of homologous structures (>100).
What are the available programs (stand-alone or webserver) to do this?
Thank you,
Best
Dear all,
We want to generate a structure-based multiple sequence alignment for a large number of homologous structures (>100).
What are the available programs (stand-alone or webserver) to do this?
Thank you,
Best wishes,
Manoj
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