Hi Manoj
If the structures are in the PDB, then PDB-KB may have already done the work
for you -
https://www.ebi.ac.uk/pdbe/pdbe-kb/
They run Gesamt on homologous structures for the whole PDB every week (as I
understand it).
Harry
> On 2 Mar 2023, at 07:45, Manoj N <nma...@iitm.ac.in> wrote:
>
> Dear all,
> We want to generate a structure-based multiple sequence
> alignment for a large number of homologous structures (>100).
>
> What are the available programs (stand-alone or webserver) to do this?
>
> Thank you,
> Best wishes,
> Manoj
>
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