I have been forced to think about deposition issues lately, because a)
depositing a structure, and b) refereeing a paper which discusses PDB
problems..
The GUIs in use in both CCP4 and Phenix offer tools to help the depositor
but it is perhaps too easy to now deposit without due care and attention
Dear all,
That's the kind of interesting question that triggers me to have a
closer look at PDB entries ... just to convince myself that a value of
30% RSRZ outliers really is as disturbing as I initially thought.
One can go through all available validation reports of X-Ray PDB
structures and ext
: [ccp4bb] Reduces the RSRZ outliers in the wwPDB validation report
Hi, It’s hard to comment on this without knowing the resolution. A general rule
of thumb is: an outlier is a statistical outlier, meaning it is not necessarily
wrong but unlikely. If you can justify it based on the experimental data
Hi,
It’s hard to comment on this without knowing the resolution. A general rule
of thumb is: an outlier is a statistical outlier, meaning it is not
necessarily *wrong* but unlikely. If you can justify it based on the
experimental data, just leave it alone.
This, in turn, means that at low resolut
Happy New Year, everyone.
Recently, I have encountered some problems when submitting PDB, and I have
seen some discussions about these problems before.
Meanwhile, I still want to ask how to reduce the RSRZ outliers in the wwPDB
validation report, is there any good way to reduce the RSRZ o
