2011/9/29 Xiaopeng Hu
> I just notified that there is a big difference between the Ramachandran
> plot analysis results produced by Coot and Morprobity (or Phenix). For the
> structure I am working now, Phenix(Morprobity) gives out Ramachandran
> outliers 0.2%, favored 95.2%, whileas Coot gives o
Hi Xiaopeng,
If you are feeding both programs exactly the same file then you are not
doing anything wrong. Notice that, if you calculate the Ramachandran plot on
Molprobity and then you go on coot, do a round of manual refinement, and
only then calculate the Ramachandran, then that can be the sour
"
Date: Fri, Sep 30, 2011 07:12
Subject: [ccp4bb] Ramachandran plot difference between Coot and Morprobity (or
Phenix)
To: "CCP4BB@JISCMAIL.AC.UK"
What does ProCheck say?
Xiaopeng Hu wrote:
> Dear all,
>
> I just notified that there is a big difference between the Ramac
What does ProCheck say?
Xiaopeng Hu wrote:
Dear all,
I just notified that there is a big difference between the Ramachandran plot
analysis results produced by Coot and Morprobity (or Phenix). For the structure
I am working now, Phenix(Morprobity) gives out Ramachandran outliers 0.2%,
favored
Dear all,
I just notified that there is a big difference between the Ramachandran plot
analysis results produced by Coot and Morprobity (or Phenix). For the structure
I am working now, Phenix(Morprobity) gives out Ramachandran outliers 0.2%,
favored 95.2%, whileas Coot gives out Outliers 1.24%,
