Oh god no don't ask Procheck , its Rama plot is a complete disaster zone - for one thing, it's * ancient*. Doesn't discriminate between amino avoid types. Grrr. To be avoided at all costs.
Sent from tiny silly touch screen ----- Reply message ----- From: "Edward A. Berry" <ber...@upstate.edu> Date: Fri, Sep 30, 2011 07:12 Subject: [ccp4bb] Ramachandran plot difference between Coot and Morprobity (or Phenix) To: "CCP4BB@JISCMAIL.AC.UK" <CCP4BB@JISCMAIL.AC.UK> What does ProCheck say? Xiaopeng Hu wrote: > Dear all, > > I just notified that there is a big difference between the Ramachandran plot > analysis results produced by Coot and Morprobity (or Phenix). For the > structure I am working now, Phenix(Morprobity) gives out Ramachandran > outliers 0.2%, favored 95.2%, whileas Coot gives out Outliers 1.24%, Allowed > 5,14% and Prefered 93.62%.I am wondering if there is a simply explain for the > difference which I don't know? Or I just made some silly mistakes? > > Best wishes, > > xiaopeng >
