Re: [ccp4bb] Question about Refmac

2020-06-16 Thread Eleanor Dodson
Thank you for cell. For P32 21 2 spacegroup with this cell the only higher Laue symmetry you could generate is P6/mmm, so as Jonathan says I wouldnt worry about the FreeR assignment.. I can look at possible NCS operators if you like - the most informative output is to run MOLREP Self Rotation on yo

Re: [ccp4bb] Question about Refmac

2020-06-15 Thread Jonathan Cooper
I remember we discussed this a lot about a year ago when Ed Berry revived a thread from 2003! https://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=ind1905&L=CCP4BB&O=D&P=72099 I think the upshot of it all was that you do not need to use shells even with quite high NCS since Ian Tickle rightly pers

Re: [ccp4bb] Question about Refmac

2020-06-15 Thread Eleanor Dodson
Hmm - this finally was rather deprecated - there are some less happy consequences to have all reflections in a particular resolution shell excluded. If your NCS means there is pseudo- symmetry in the diffraction and it would be possible to have a cell with higher point symmetry (an example might be

[ccp4bb] Question about Refmac

2020-06-15 Thread
Hello, I'm refining protein structure in Refmac and I have NCS greater than 4 ( I've 8 identical subunits in the asymmetric unit). In the "Refinement parameters" section in Refmac, how can I pick Rfree set based on thin resolution shells rather than in the normal random method? I've read abou

[ccp4bb] question about refmac/coot findwater

2009-12-14 Thread Boaz Shaanan
Hi, This question may have been asked before, so please excuse me for re-posting it. I notice that when I do a round of 10 cycles of refmac combined with (5cycles, 3 sigma level, 1.4 A resolution) of findwaters in coot, some water molecules from the different coot cycles fall one on top of the