Re: [ccp4bb] PDB validation - oligosacchides

2024-05-04 Thread Deborah Harrus
Hi Natalie, comp_id needs to be a valid CCD ID, in this case 'GLC'. Not sure why/how the invalid value 'GLC-b-D' was generated. Let us know if you need further assistance, Deborah On 03/05/2024 22:25, Natalie Losada wrote: I am validating a structure with two sucrose molecules. I am gettin

Re: [ccp4bb] PDB validation - oligosacchides

2024-05-03 Thread Nigel Moriarty
Natalie If you send me the model file off-list I can help. BTW, there is a Phenix specific BB that can help with all things Phenix. Cheers Nigel --- Nigel W. Moriarty Building 33R0349, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory Berkeley, CA 94720-8235

[ccp4bb] PDB validation - oligosacchides

2024-05-03 Thread Natalie Losada
I am validating a structure with two sucrose molecules. I am getting the following error when uploading the file: ERROR: In 'data_comp_GLC' block: In 'chem_comp_atom' category: The 'comp_id' field value 'GLC-b-D' is not same as 'GLC' defined in data block name. I have copied sucrose directly