Natalie If you send me the model file off-list I can help.
BTW, there is a Phenix specific BB that can help with all things Phenix. Cheers Nigel --- Nigel W. Moriarty Building 33R0349, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory Berkeley, CA 94720-8235 Email : nwmoria...@lbl.gov Web : CCI.LBL.gov ORCID : orcid.org/0000-0001-8857-9464 On Fri, May 3, 2024 at 2:36 PM Natalie Losada < 0000cf601a9f7333-dmarc-requ...@jiscmail.ac.uk> wrote: > I am validating a structure with two sucrose molecules. I am getting the > following error when uploading the file: > > ERROR: In 'data_comp_GLC' block: > > In 'chem_comp_atom' category: > The 'comp_id' field value 'GLC-b-D' is not same as 'GLC' defined in data > block name. > > I have copied sucrose directly from 5d3g.cif in Coot, and refined in > phenix. I have also made the sucrose manually and acquired the cif from > another website, followed by placement in Coot and refinement with phenix. > > Any thoughts how to save the file in a way that PDB will accept? > > Natalie > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
