Re: [ccp4bb] PDB search help

2017-10-04 Thread John Berrisford
globin" AND assembly_composition:"protein%20structure" AND molecule_type:Protein&wt=json By default this will get you 10 result – to get more add &rows=10 to the end and change 10 to a larger number. Hope this helps John From: CCP4 bulletin board [mailto:CCP4

Re: [ccp4bb] PDB search help

2017-10-02 Thread Gloria Borgstahl
Our RPA14/32 crystals from 2007 included full length protein for both subunits (RPA14 and RPA32), but only the central OB fold of RPA32 could be modelled. The crystals included RPA32(1-270) but only 42-176 could be modelled. I remember being very frustrated by not being able to visualize the wHLH

Re: [ccp4bb] PDB search help

2017-10-02 Thread zaigham mahmood khan
Hey Rajesh You may try the following link: Please enter the protein sequence, and scroll down the "Select standard database" tab, and choose "pdb_nr". Once you will "submit" the job, you will most likely get what you want to see! You may pick any pdb ID from the result section, and from pdb.org,

[ccp4bb] PDB search help

2017-09-27 Thread Rajesh
Dear BB, Sorry for the off topic. Does anyone know how to search the PDB for the entries that havethe density only for part of the protein molecule rather than for the entirelength of the protein attempted to crystallize? Thanks,Rajesh..