If you just run SSM with the two files I think you will get the
alignment you want? It seems to be able to sort out subunits from a
whole model.
Eleanor
Paul Emsley wrote:
> conancao wrote:
>
>> Dear all:
>>
>> I have problem to supperimpose 2 homologous proteins(only one subunit
>> is homolog
Try RAPIDO:
http://webapps.embl-hamburg.de/rapido
Roberto
Dr. Roberto Mosca
EMBL c/o DESY
Notkestr. 85
22607 Hamburg
Germany
Email: [EMAIL PROTECTED]
Tel: +49 (0)40 89902 131
Web: http://www.embl-hamburg.de/~rmosca
.
, protein2CA, object=alignment
set seq_view
Cheers,
Warren
From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of conancao
Sent: Friday, April 11, 2008 6:11 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Need help for supperimpose 2 homologous
conancao wrote:
> I have problem to supperimpose 2 homologous proteins(only one
> subunit is homologous) in coot.Could anybody give suggestion either
> using coot or other easily availabe software to superimpose homologous
> structures(pdb) and give a finial superimposed pdb or picture.
conancao wrote:
> Dear all:
>
> I have problem to supperimpose 2 homologous proteins(only one subunit
> is homologous) in coot.Could anybody give suggestion either using coot
> or other easily availabe software to superimpose homologous
> structures(pdb) and give a finial superimposed pdb or pictur
Hi, Hongnam Cao,
try "phenix.superpose_pdbs".
More details:
http://www.phenix-online.org/documentation/superpose_pdbs.htm
http://www.phenix-online.org/
Cheers,
Pavel.
On 4/11/2008 5:57 PM, conancao wrote:
> Dear all:
>
> I have problem to supperimpose 2 homologous proteins(only one subunit
> i
Dear all:
I have problem to supperimpose 2 homologous proteins(only one subunit
is homologous) in coot.Could anybody give suggestion either using coot or other
easily availabe software to superimpose homologous structures(pdb) and give a
finial superimposed pdb or picture. Thank you.
