] Re: [ccp4bb] Modeling ATP/ADP
Tried the homologues thing. There are homologues and I've done the fitting, but
this is what I consider to be subjective. I'm certain the referee will ask:
Given the quality of density for the nucleotide, how certain are the authors
that a different
NY 10031
>> From: CCP4 bulletin board on behalf of Jon Cooper
>> <488a26d62010-dmarc-requ...@jiscmail.ac.uk>
>> Sent: Thursday, July 23, 2020 1:07 PM
>> To: CCP4BB@JISCMAIL.AC.UK
>> Subject: [EXTERNAL] Re: [ccp4bb] Modeling ATP/ADP
>>
>> Hello, do you hav
ent of Chemistry and Biochemistry
> New York, NY 10031
> From: CCP4 bulletin board on behalf of Jon Cooper
> <488a26d62010-dmarc-requ...@jiscmail.ac.uk>
> Sent: Thursday, July 23, 2020 1:07 PM
> To: CCP4BB@JISCMAIL.AC.UK
> Subject: [EXTERNAL] Re: [ccp4bb] Modeling
College of New York
> Department of Chemistry and Biochemistry
> New York, NY 10031
> From: CCP4 bulletin board on behalf of Jon Cooper
> <488a26d62010-dmarc-requ...@jiscmail.ac.uk>
> Sent: Thursday, July 23, 2020 1:07 PM
> To: CCP4BB@JISCMAIL.AC.UK
> Subject: [EXTERNAL] Re:
: Thursday, July 23, 2020 1:07 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [EXTERNAL] Re: [ccp4bb] Modeling ATP/ADP
Hello, do you have any homologues in the PDB with ATP, etc, bound as a guide?
Coot is pretty good at fitting known ligands, and unknown ones, too!
Original Message
On 23
Hello, do you have any homologues in the PDB with ATP, etc, bound as a guide?
Coot is pretty good at fitting known ligands, and unknown ones, too!
Original Message
On 23 Jul 2020, 17:53, Reza Khayat wrote:
> Hi,
>
> Can folks suggest programs for objectively docking ATP/ADP mol
Hi,
Can folks suggest programs for objectively docking ATP/ADP molecules into
density? Our density is not so good, probably because of occupancy, and we'd
like a less subjecting approach for modeling. Thanks.
Best wishes,
Reza
Reza Khayat, PhD
Assistant Professor
City College of New York
De
