Hello, do you have any homologues in the PDB with ATP, etc, bound as a guide? 
Coot is pretty good at fitting known ligands, and unknown ones, too!

-------- Original Message --------
On 23 Jul 2020, 17:53, Reza Khayat wrote:

> Hi,
>
> Can folks suggest programs for objectively docking ATP/ADP molecules into 
> density? Our density is not so good, probably because of occupancy, and we'd 
> like a less subjecting approach for modeling. Thanks.
>
> Best wishes,
> Reza
>
> Reza Khayat, PhD
> Assistant Professor
> City College of New York
> Department of Chemistry and Biochemistry
> New York, NY 10031
>
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