@JISCMAIL.AC.UK
Subject: [ccp4bb] Logfile Problem on Dual-Core Intal Mac with Os X Server 10.4
and CCP4 6.0.1
Hello All!
I have a problem with the output there from CCP4 into the log files on a
dual-Core Intel Mac with Os X Server 10.4 and CCP4 6.0.1.
ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B
Hi Justin,
On Mon, Oct 29, 2007 at 01:11:54PM +0100, Justin Schmitz wrote:
> Hello All!
>
> I have a problem with the output there from CCP4 into the log files on a
> dual-Core Intel Mac with Os X Server 10.4 and CCP4 6.0.1.
>
>
> ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
> ATOM13 Ano
Hi Justin,
Try exporting GFORTRAN_UNBUFFERED_ALL = 1
Cheers,
Graeme
From: CCP4 bulletin board on behalf of Justin Schmitz
Sent: Mon 29/10/2007 12:11 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Logfile Problem on Dual-Core Intal Mac with Os X Server 10.4
Hi Justin
is this a self compiled ccp4? Did you use gfortran? If so, it is a
known problem. From the online problems pages
CCP4i scripts fail due to parsing errors in log files
Date : 22/05/2006
CCP4 Version : 6.0.0 and others
System : Compilations that used gfortran
Level : Serious
Status
IIUC this is the problem of different flushing of C and Fortran code,
leading to the output appearing out of order.
For Linux you need to set
"export GFORTRAN_UNBUFFERED_ALL=Y"
i.e. put this in .bashrc or similar.
I don't do Macs, but I assume there is something similar .
HTH
Martyn
On Mon
Hello All!
I have a problem with the output there from CCP4 into the log files on a
dual-Core Intel Mac with Os X Server 10.4 and CCP4 6.0.1.
ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
ATOM13 Ano 0.147 -0.001 0.7232.055 BFAC 20.000
ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
Hello All!
I have a problem with the output there from CCP4 into the log files on a
dual-Core Intel Mac with Os X Server 10.4 and CCP4 6.0.1.
ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
ATOM13 Ano 0.147 -0.001 0.7232.055 BFAC 20.000
ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
Hello All!
I have a problem with the output there from CCP4 into the log files on a
dual-Core Intel Mac with Os X Server 10.4 and CCP4 6.0.1.
ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
ATOM13 Ano 0.147 -0.001 0.7232.055 BFAC 20.000
ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL
