IIUC this is the problem of different flushing of C and Fortran code, leading to the output appearing out of order.
For Linux you need to set "export GFORTRAN_UNBUFFERED_ALL=Y" i.e. put this in .bashrc or similar. I don't do Macs, but I assume there is something similar ..... HTH Martyn On Mon, 2007-10-29 at 13:33 +0100, Justin Schmitz wrote: > Hello All! > > I have a problem with the output there from CCP4 into the log files on > a dual-Core Intel Mac with Os X Server 10.4 and CCP4 6.0.1. > > > ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL > ATOM13 Ano 0.147 -0.001 0.723 2.055 BFAC 20.000 > ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL > ATOM14 Ano 0.347 0.519 0.895 0.939 BFAC 20.000 > ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL > ATOM15 Ano 0.232 0.498 0.965 0.546 BFAC 20.000 > ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL > ATOM16 Ano 0.031 0.124 0.022 -2.575 MLPHARE: Normal > termination > Times: User: 84.9s System: 0.3s Elapsed: 1:27 > </pre> > </html> > <!--SUMMARY_END--></FONT></B> > BFAC 20.000 > ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL > ATOM17 Ano 0.027 -0.001 0.859 2.450 BFAC 20.000 > ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL > ATOM18 Ano 0.102 -0.002 0.870 3.247 BFAC 20.000 > ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL > ATOM19 Ano 0.025 0.107 0.024 5.815 BFAC 20.000 > ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL > ATOM20 Ano 0.024 0.072 0.069 5.565 BFAC 20.000 > ATREF X ALL Y ALL Z ALL OCC ALL AOCC ALL B ALL > > > > Many Programs do this e.g. refmac. The Termination message is passed > to the log file before all other data is in it. This breaks of > ploting or in case of mlphare of the whole process. > > Does anybody know how to handle this? Is it related to the OS or to > CCP4? > > > Thanks for helping another time justin > -- *********************************************************************** * * * Dr. Martyn Winn * * * * STFC Daresbury Laboratory, Daresbury, Warrington, WA4 4AD, U.K. * * Tel: +44 1925 603455 E-mail: [EMAIL PROTECTED] * * Fax: +44 1925 603825 Skype name: martyn.winn * * URL: http://www.ccp4.ac.uk/martyn/ * ***********************************************************************
