Re: [ccp4bb] Domain rotation axis reprentation

2009-04-09 Thread Michael Oldham
If you have the arrow defined by GLY CA coordinates which is created from DynDom then you can use the script on the following link to define an axis in PyMOL and change the color or thickness as you want. Define the position of the axis using two of the GLY CA coordinates found along the arrow lin

[ccp4bb] Domain rotation axis reprentation

2009-04-09 Thread peter hudson
Hi all Sorry for partially off topic query I am working with a multidomain protein. which is present in closed and open conforamtion because of the motion in the domains of the protein. I would like to describe the roation angle of the different domains of the protein and the direction of th