Re: [ccp4bb] Difficult MR with MBP fusion protein

2014-05-18 Thread Pascal Egea
Dear Niu, It is very unlikely that MBP will be disordered. We use that protein a standard for SAXS calibration and gel filtration it is extremely well behaved. There is an excellent review about MBP enhanced crystallization (by Moon et al) and you can do a quick survey of the PDB to find the corn

Re: [ccp4bb] Difficult MR with MBP fusion protein

2014-05-16 Thread Gang Dong
Dear Randy, Over the last ~6 years, we have tried to use the MBP tag to enhance crystallization on >10 proteins. Only one that couldn't crystallize by itself in the end crystallized with the fusion tag. However, unfortunately, the target protein (~10 kDa) turned out to be in the big cavity of the

Re: [ccp4bb] Difficult MR with MBP fusion protein

2014-05-16 Thread Randy Read
Dear Niu, When it works, crystallising a fusion protein can be great, with the big advantage that placing a model for the (known) carrier protein gives free phase information. Certainly there are examples of this working, but in the early days of this (20 years or so ago?), I remember hearing

Re: [ccp4bb] Difficult MR with MBP fusion protein

2014-05-16 Thread Raji Edayathumangalam
Hi Niu, Several things come to mind. First, it may not be trivial when the first component to be placed is ~20kDa and the second component (SU) is ~43kDa. The signal after placing the first component may be weak. Also, if the model for the smaller SU has low sequence identity with the target and y

[ccp4bb] Difficult MR with MBP fusion protein

2014-05-16 Thread Niu Tou
Dear All, Recently we collected some data of a MBP fusion protein, at around 4A resolution. The protein itself is about half of the MBP size. However when we tried to solve it with MR, it failed. We tried to use MBP alone, homology model of target protein alone, and MBP+model. It is very strange t