Re: [ccp4bb] Off-topic: coomassie linearity?

2008-09-25 Thread Steven Darnell
nd 20 microg per band or spot. Staining and destaining require only 30 min, and the method is compatible with subsequent immunodetection. PMID: 16336940 Regards, Steve -- Steven Darnell University of Wisconsin-Madison Madison, WI USA Jacob Keller said the following, on 09/25/2008 04:35 PM:

Re: [ccp4bb] interface energetics

2008-09-12 Thread Steven Darnell
Andreas Förster said the following on 9/12/08 4:42 AM: Thanks to all who responded to my question regarding the energetics of a known interface applied to orthogolous dimers. Steven Darnell asked me for some clarifications. I have the structure of a homodimer, defined the dimerization interface

Re: [ccp4bb] interface energetics

2008-09-09 Thread Steven Darnell
n 8. PMID: 17603074 [PubMed - indexed for MEDLINE] Thank you. No worries. Does any one else have any suggestions or corrections? I've only had 7 hours of sleep since Saturday. ~Steve -- Steven Darnell Univeristy of Wisconsin-Madison Madison, WI USA [EMAIL PROTECTED]

Re: [ccp4bb] Off-topic: Native gel electrophoresis of basic proteins

2008-08-26 Thread Steven Darnell
gel. Using this gel system, we show that the polypyrimidine tract-binding protein (PTB) is a monomer. PMID: 16991206 [PubMed - indexed for MEDLINE] -- Steven Darnell Department of Biochemistry University of Wisconsin-Madison Madison, WI USA [EMAIL PROTECTED] said the following on 8/26/08 12:20

Re: [ccp4bb] interface

2008-08-08 Thread Steven Darnell
ing half that value, or what it calls "interface area". Potentially confusing. Phil Jeffrey Princeton -- Steven Darnell Department of Biochemistry University of Wisconsin-Madison Madison, WI USA

Re: [ccp4bb] interface

2008-08-07 Thread Steven Darnell
Sorry, that equation should read: Buried_Surface_Area = ASA_unbound1 + ASA_unbound2 - ASA_bound ASA = Accessible Surface Area The way I wrote it before would give you a negative value. Regards, Steve Darnell -- Steven Darnell Department of Biochemistry University of Wisconsin-Madison Madison

Re: [ccp4bb] interface

2008-08-07 Thread Steven Darnell
rred method. It's a matter of personal preference. From a programming point-of-view, the distance between C-alpha or residue atoms is preferred because it's the easiest to implement and the fastest to compute. Regards, Steve Darnell -- Steven Darnell Department of Biochemistry University of Wisconsin-Madison Madison, WI USA