Re: [ccp4bb] AW: [ccp4bb] Molecular replacement with template having low sequence identity

2017-06-05 Thread Shankar Prasad Kanaujia
> peak)? Although phaser should detect it and correct it accordingly but only > if you are searching for even number of ensembles in the ASU. > > Good luck, > Sudipta. > > On Wed, Aug 3, 2016 at 9:14 AM, Shankar Prasad Kanaujia < > spkanau...@gmail.com> wrote: > >

Re: [ccp4bb] multi-domain protein with identical tertiary structure

2009-07-02 Thread Shankar Prasad Kanaujia
;domain', pretty much every repeat-protein > (e.g. TPR, WD40 etc) could fall under this category. > > Cheers, > Charlie > > > Shankar Prasad Kanaujia wrote: > >> Dear CCP4 users, >> Is there any multi-domain protein (with at least two domains) whi

[ccp4bb] multi-domain protein with identical tertiary structure

2009-07-01 Thread Shankar Prasad Kanaujia
Dear CCP4 users, Is there any multi-domain protein (with at least two domains) which has identical tertiary structure of each domain ? Thanking you. -regards shankar

[ccp4bb] Problem in validating the refined model using ADIT server (RCSB) with H 3 space group

2007-02-11 Thread Shankar Prasad Kanaujia
120.00 H 3 9 Any suggestions will be very helpful. Thanking you. --- Yours Sincerely, Shankar Prasad Kanaujia Research Student C

Re: [ccp4bb] to detwin the twinned data

2007-02-07 Thread Shankar Prasad Kanaujia
Dear shivesh, As far as I know, you can use detwin program from CCP4. Another option is to use CNS (there is separate directory called xtal_twin where all necessary input files are there for twinned data). Best of luck. --- Yours Sincerely, Shankar Prasad Kanaujia Research Student C/O - Dr. K

Re: [ccp4bb] Refinement of data from twinned crystals

2007-02-05 Thread Shankar Prasad Kanaujia
meant for refining twinned data. Also in CCP4 package, there is a program called "detwin" and then refine normally. Thanking you all again. --- Yours Sincerely, Shankar Prasad Kanaujia Bioinformatics Center, Department of SERC IISc, Bangalore - 12, INDIA. Mobile: 9845631581 On Thu,

[ccp4bb] Refinement of data from twinned crystals

2007-02-01 Thread Shankar Prasad Kanaujia
ich of the above two ways is the right way to refine the model. And why there is almost 5% difference in R-factor values. Any suggestions or references will be highly appreciated. Thanking you all in advance. -- Yours Sincerely, Shankar Prasad Kanaujia IISc, Bangalore - 12 Mobile: 9845631581