[ccp4bb] Postdoctoral and technical positions at University of São Paulo

Dear colleagues, We are looking for postdoctoral research associates to join a collaborative FAPESP-funded project with Andrea Balan's group at the Department of Microbiology at University of São Paulo (São Paulo campus in Butantã) to study multidrug exporters in ESKAPE pathogens and explore po

Re: [ccp4bb] [EXTERNAL] [ccp4bb] access to the electWhile tron density maps of a PDB entry

While to answering the question on mtz availability or conversion, I do find the “Fetch PDB and Maps from PDB-REDO…” option in Coot’s “File” menu the easiest way to get maps for inspection (with some fixes to the structure as well), even if not quite the same as the authors would have looked at.

[ccp4bb] Postdoctoral position in Cambridge UK

Dear colleagues, We have an exciting postdoctoral opportunity in our group to work with Bicycle Therapeutics. Looking for motivated candidates with green protein fingers and experience in structural biology. 12 months post to start with. Details of the position and link to our application por

[ccp4bb] Postdoctoral position in University of Cambridge

project be successful, funding could be extended further. More details and links to application portal from here: https://www.jobs.cam.ac.uk/job/39691/ Happy to answer informal queries. Best wishes, Marko - Marko Hyvonen Department of Biochemistry University of Cambridge mh...@cam.ac.uk

[ccp4bb] Postdoctoral position to characterise novel plastic degrading enzymes

ix as well. More details and application from University of Cambridge job portal: https://www.jobs.cam.ac.uk/job/38770/ Feel free to drop a line if you have specific questions. best, Marko ----- Marko Hyvonen Department of Biochemistry University of Cambridge mh...@cam.ac.uk<mailto:mh...@cam

[ccp4bb] Rockimager (spares) looking for a new home

serious competition. Best, Marko ----- Marko Hyvonen Department of Biochemistry University of Cambridge mh...@cam.ac.uk<mailto:mh...@cam.ac.uk> https://hyvonen.bioc.cam.ac.uk @HyvonenGroup To unsubscribe from the CCP4

[ccp4bb] Assistant/Associate professor position open at the Department of Biochemistry, Cambridge (UK, obvs)

strong in structural biology with great facilities for cryo-EM, crystallography, NMR and biophysics: https://facilities.bioc.cam.ac.uk/. More details on how to apply here: https://www.jobs.cam.ac.uk/job/38144/ Best, Marko - Marko Hyvonen Department of Biochemistry University of Cambridge mh

Re: [ccp4bb] off-topic: experience BioRad NGC vs Aekta Pure

ry soon. Hth, Marko Marko Hyvonen Department of Biochemistry University of Cambridge https://hyvonen.bioc.cam.ac.uk @HyvonenGroup mh...@cam.ac.uk<mailto:mh...@cam.ac.uk> From: CCP4 bulletin board On Behalf Of Schulz, Eike-Christian Sent: 16 September 2022 08:40 To: CCP4BB@JISCMAIL.A

[ccp4bb] HFSP funding for Ukrainian scientists

Dear colleagues, please see message below from Prof Laura Itzhaki. HFSP has a new initiative to support Ukrainian scientists via supplements to current HFSP project grant holders and Fellows. We have 18 months on our HFSP project grant and would be happy to consider Ukrainian PhD students or pos

[ccp4bb] Postdoctoral position in collaboration with Bicycle Therapeutics

a talented structural biologists. Application details from University job portal along with contact details for queries: https://jobs.cam.ac.uk/job/34566/ Best, Marko Marko Hyvonen Department of Biochemistry University of Cambridge https://hyvonen.bioc.cam.ac.uk @HyvonenGroup mh...@cam.ac.uk

[ccp4bb] Advice on crystal imaging systems

ry of the responses back to CCP4bb (w/o comments that are asked to be kept confidential). Thanks in advance, Marko ----- Marko Hyvonen Department of Biochemistry University of Cambridge https://hyvonen.bioc.cam.ac.uk @HyvonenGroup mh...@

[ccp4bb] Postdoctoral position in structure-guided drug discovery

, with crystallisation, NMR, Biophysics and cryo-EM facilities within the Department. Details of the position are found on University of Cambridge online application portal at https://www.jobs.cam.ac.uk/job/32674/ Informal queries to me are most welcome. Best, Marko Marko Hyvonen Department of

[ccp4bb] Postdoctoral position in FBDD in Cambridge UK

https://www.jobs.cam.ac.uk/job/31927/ Happy to receive informal queries by email as well. Please do spread the word towards any potential candidates. Best, Marko Marko Hyvonen Department of Biochemistry University of Cambridge https://hyvonen.bioc.cam.ac.uk @HyvonenGroup mh...@cam.

Re: [ccp4bb] External: Re: [ccp4bb] AlphaFold: more thinking and less pipetting (?)

total mean of 3.8 Å." Cheers -- Ian On Tue, 8 Dec 2020 at 13:51, Marko Hyvonen <mh...@cam.ac.uk> wrote:

Re: [ccp4bb] External: Re: [ccp4bb] AlphaFold: more thinking and less pipetting (?)

link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are a

[ccp4bb] Postdoctoral fellowship in structure-guided drug discovery

-guided-drug-discovery/ Marko -- Marko Hyvonen Department of Biochemistry, University of Cambridge mh...@cam.ac.uk +44 (0)1223 766 044 @HyvonenGroup http://hyvonen.bioc.cam.ac.uk

[ccp4bb] Postdoctoral position in drug discovery

enquiries should be made to Dr. Walid Khaled (wt...@cam.ac.uk). Application details are found at http://www.jobs.cam.ac.uk/job/16025/. Closing date for applications is 26th January 2018. best, Marko -- Marko Hyvonen Department of Biochemistry, University of Cambridge mh...@cam.ac.uk +44 (0

[ccp4bb] PhD studentships in tackling M. abscessus infections in Cystic Fibrosis

ation of patient-to-patient transmission and the emergence of dominant clones, the student will use phylogenetic analyses to investigate the adaption of M. abscessus to survival in the CF lung, and to transmission between hosts. Position 3 Supervised by Professor Sir Tom Blundell and Dr Marko Hy

[ccp4bb] Sequence for pBS24Ub

/abs/nbt0789-705.html) thanks, Marko _ Marko Hyvonen Department of Biochemistry, University of Cambridge ma...@cryst.bioc.cam.ac.uk http://www-cryst.bioc.cam.ac.uk/groups/hyvonen

[ccp4bb] Post-doctoral fellowship in fragment-based drug discovery

Dear colleagues, below is an advert for an postdoc position in my group. best, Marko Applications are invited from post-doctoral scientists with expertise in protein crystallography to join the group of Dr Marko Hyvonen (http://www-cryst.bioc.cam.ac.uk/groups/hyvonen/) at the Department of

Re: [ccp4bb] Rec- variant of E coli B

Dpto de Estructura de Macromoleculas Centro Nacional de Biotecnologia - CSIC c/Darwin 3 E-28049 Madrid, Spain tel. (+34) 91 585 4616 http://www.cnb.csic.es/~mjvanraaij _ Marko Hyvonen Department of Biochemistry, University of Cambridge ma

Re: [ccp4bb] sequence format conversion

All I was looking for a script or an informatics tool enabling me to change the sequence from FASTA format to something like following: FASTA FORMAT abcdefghijklmnopqrstuvwxyz to 1 abcde fghij 11 klmno pqrst 21 uvwxy z Many thanks in advance Regards Kris

[ccp4bb] Postdoctoral research associate in fragment-based inhibitor design

We are seeking to appoint a Research Associate in the group of Dr Marko Hyvonen to develop chemical tools against signalling proteins using fragment-based drug discovery methods. The post is part of a Wellcome Trust funded, multi-disciplinary programme between Departments of Biochemistry (Prof

[ccp4bb] Postdoctoral position in fragment-based inhibitor design

Postdoctoral position in protein crystallography in the group of Dr Marko Hyvonen, at the Department of Biochemistry, University of Cambridge, to develop chemical tools against signalling proteins using fragment-based drug discovery methods. The post is part of a Wellcome Trust funded, multi

[ccp4bb] Postdoctoral positions in fragment-based drug discovery projects

A number of post-doctoral positions are available in the group of Marko Hyvonen, at the Department of Biochemistry, University of Cambridge. These positions are in multidisciplinary projects aimed at developing novel therapeutic agents and chemical tools against protein-protein interactions

Re: [ccp4bb] Meaning of sigma level of electron density map?

(http://www.globalphasing.com) > *** > _____ Marko Hyvonen Department of Biochemistry University of Cambridge http://www-cryst.bioc.cam.ac.uk/~marko tel: +44-(0)1223-766 044 / 760 468, fax: 766 002 ___

Re: [ccp4bb] Meaning of sigma level of electron density map?

f > geting quoted 5 years later or some future employer or funding agency > checking on their past record). I fully agree. Marko Marko Hyvonen University of Cambridge [EMAIL PROTECTED]

Re: [ccp4bb] MSE

> > % egrep '^CRYST|^SCALE|^ATOM|^HETATM.{11}(MSE|PTR|SEP|TPO)' your.pdb > > standard_residues_only.pdb I think the original request was to extract particular chains, so extending the above further to select (say) chain A egrep '^CRYST|^SCALE|^ATOM.{17}A |^HETATM.{11}(MSE|PTR|SEP|TPO) A' your.p

Re: [ccp4bb] Water is about 60% everywhere

> > Are there any methods that allow one to input such ions as possible > candidates? What would be ideal is to have a program that says something > like "The density peak at x,y,z, has a .0973 chance of being real. It is > only 2.2 Å from N7 of G12, precluding water. Based on the mother liquor

Re: [ccp4bb] Movie for Powerpoint in windows

Hi Ibrahim, I have used pretty much the same options for mencoder as you. mencoder "mf://myfile*.*[0-9].png" -mf fps=18 -o mymovie.mpg -ovc lavc -lavcopts vcodec=msmpeg4v2:vbitrate=9000 (and yes, 18fps is on the slow side, but in my opinion sufficient) Several people have played these movies