[ccp4bb] Post-doctoral Fellowship (M/F) on the biochemistry and structural biology in Lyon, France

Dear all, A Post-doctoral fellowship is available in our team. See details below. Best regards, Laurent An ANR-funded post-doctoral position is available in the “Structural Biology of Bacterial Macromolecular Complexes” team at Molecular Microbiology and Structural Biochemistry Laboratory

[ccp4bb] coot - how to define a keyboard shortcut for "update NCS ghosts with local match" ?

would be much faster. Which function should I use to  do that ? (add_key_binding "Update ghosts" "a" (unknown function) thanks a lot ! Laurent -- logo-ipbs Laurent Maveyraud Professor of Biophysics | University of Toulouse Doctoral School Biology - Health - Biotech

Re: [ccp4bb] CCP4BB Digest - 21 Dec 2023 to 22 Dec 2023 (#2023-324) (out of office)

Thank you for your e-mail. I am out of office until January 2nd, 2024. I will respond to your e-mail as soon as possible upon my return. For urgent matters please contact: b...@boku.ac.at Thank you for your understanding. With kind regards, Elisabeth Laurent >>> CCP4BB automatic dige

[ccp4bb] Coot and Pandda questions

it possible to find old CCP4 versions to download and install (I am working with MacOS)? Thanks for your help, Laurent Laurent Maveyraud Professor of Biophysics | University of Toulouse | Structural Biophysics Team Doctoral School Biology - Health - Biotechnologies +33 5 61 17 54 35 | +33 6 46 04 21

[ccp4bb] Running Pandda with CCP4 7.1 ?

I download it (MacOS )? Thanks for your help ! Laurent Laurent Maveyraud Professor of Biophysics | University of Toulouse | Structural Biophysics Team Doctoral School Biology - Health - Biotechnologies +33 5 61 17 54 35 | +33 6 46 04 21 11 | laurent.maveyr...@ipbs.fr <mailto:laurent.mav

[ccp4bb] Postdoctoral position, Institut Européen de Chimie et Biologie, Bordeaux, France

protein complexes involved in the assembly of the /Helicobacter pylori/type IV secretion system. The selected candidate will be in charge in the purification and structure determination of the complexes by X-ray crystallography or Cryo-EM in collaboration with the group of Dr. Laurent Terradot

[ccp4bb] 48 months PhD fellowship in Structural Microbiology available in Lyon, France

etter, 1-2 reference letters and a detailed CV to Dr. Laurent Terradot (laurent.terra...@ibcp.fr) Details on how to apply can be found here and the deadline for application is February the 10th https://www.universite-lyon.fr/research/phd/phd-csc/csc-phd-scholarships-candidates-applying-to-

[ccp4bb] adding external planar restraint in refmac5

dictionnaire… is that correct ? Any clues will be more than welcome ! Have a nice day, Laurent Laurent Maveyraud Prof. University of Toulouse www.ipbs.fr | cribligand.ipbs.fr IPBS-Toulouse | CNRS-Université Toulouse III-Paul Sabatier 205 Route de Narbonne, BP 64182, 31077 Toulouse Cedex

[ccp4bb] Post-doctoral position in IBCP, Lyon- France

Dear all, *A 2 years postdoctoral position funded by the Agence National de la Recherche (ANR) *is available in the group of Dr. Laurent Terradot (@LaurentTerradot ) in the Unit Molecular Microbiology and Structural Biochemistry (MMSB) of the Institut de Biologie et Chimie des Protéines

[ccp4bb] looking for promotif...

Dear all, we are currently trying to pick up the trail of the PROMOTIF program for which we can't find a link that works properly. Does anybody know where I can find it ? thanks for your help, laurent -- -- Laurent Mave

Re: [ccp4bb] P3212--1's in Space Group Names?

the a and -b vectors. laurent Le 18/02/2015 17:04, Kay Diederichs a écrit : Hmm, "placeholder" for me does not seem to emphasize enough the role that this number plays in the space group names. My understanding (but I fail to remember where I read this ...) is that the first number

[ccp4bb] problems with wincoot 8.1 on windows 7 with multiple desktop

aphic remains blank... Things were fine with wincoot 0.7.2... any ideas ?? thanks laurent -- -- Laurent Maveyraud laurent.maveyraud AT ipbs DOT fr P I C T --- Plateforme Intégrée de Criblage de Toulouse Université Paul Sabatier /

Re: [ccp4bb] Question on Refmac5

your PDB file should be correct. Laurent Le 06/01/2015 11:46, Tim Gruene a écrit : Dear Dialing, unless this has changed recently, in my experience refmac5 writes the PDB and MTZ file only at the end of refinement, not intermediately. Have you ruled out this is an issue with your operating

[ccp4bb] depositing PDB files from refmac

? Or should I just ignore this ? thaks ! laurent -- -- Laurent Maveyraud laurent.maveyraud AT ipbs DOT fr P I C T --- Plateforme Intégrée de Criblage de Toulouse Université Paul Sabatier / CNRS / I.P.B.S. UMR 5089 Départ

[ccp4bb] Post-doctoral position in Lyon, France

Post-doctoral position in Structural Biology of Bacterial Pathogenesis at the IBCP (Lyon, France) ** *A FINOVI (http://www.finovi.org) funded postdoctoral position *is available immediately in the group of Laurent Terradot at the Institut de Biologie et Chimie des Protéines (IBCP), Lyon

Re: [ccp4bb] Nvidia 3D Vision 2 - Centos5 - Coot

und a model # for this kit that comes with this cable and last I checked nvidia store was out of stock on purchasing these cables separately, so we still purchase the v1 kits. On Thu, Jun 14, 2012 at 6:55 AM, Laurent Maveyraud wrote: Hi, on a Mandriva system, we had it working adding those two lin

Re: [ccp4bb] Nvidia 3D Vision 2 - Centos5 - Coot

no idea what the second line means.. but it works with coot. hope this helps laurent Le 14/06/2012 13:19, S. Thiyagarajan a écrit : Dear CCP4 users Has anybody successfully configured NVIDIA 3D VISION-2 kit in CentOS-5.x and used COOT hardware stereo. I am currently having Quadro 4000 graphics c

Re: [ccp4bb] P321 space group reindex problem

to your specific case... good luck ! laurent Thanks. Best wishes, Qixu Cai 2012/5/30 Laurent Maveyraud mailto:laurent.maveyr...@ipbs.fr>> Hi, it is therefore likely that your spacegroup is really P321... hopefully, your data set is not twinned, did you check that ?

Re: [ccp4bb] MAD data process problem

phasing, so use it ! As Tim mentionned it : process all wavelength with anomalous switched on ! laurent Le 30/05/2012 07:59, Qixu Cai a écrit : Thank you very much for your reply. In my own understanding, We collect the peak dataset, because of the large F'', and we can get strong ano

Re: [ccp4bb] P321 space group reindex problem

have usefull phasing info at low resolution. hope this helps laurent Le 30/05/2012 07:50, Qixu Cai a écrit : At first, I processed the data at P3 space group. But after phenix.xtriage analysis, the Xtriage told me the space group must be P321, so I used P321 to process my data, and got an

Re: [ccp4bb] MAD data process problem

ample, in the case of Se-MAD : peak : f'=-6, f''-8 inflexion : f'=-11, f''= 4 high remote : f'= -4, f''= 4 the low energy remote is the one with the weakest anamalous signal, close to 0 in the case of Se... hope this helps laurent Le 29/05/2012 1

Re: [ccp4bb] P321 space group reindex problem

site : http://www.ccp4.ac.uk/dist/ccp4i/help/modules/appendices/reindexing.html hope this helps laurent Le 29/05/2012 10:48, Qixu Cai a écrit : Dear all, I have a dataset at P321 space group. And I want to reindex from (h,k,l) to (k,h,l) or (h,k,-l), because I want to merge this dataset to the

Re: [ccp4bb] Restrained refinement problem

will not produce the error you have, but will certainly distort the geometry... hope this helps laurent Le 12/03/2012 06:21, Dipankar Manna a écrit : Dear All, As I am practicing new in the crystallography, I am facing some difficulties in refining the ligand bound structure. Protein I am

Re: [ccp4bb] High R factor

refmac will perform the rigid body step in P4 and not P41... This should be indicated in the molrep logfile... check it carefully ! hope this helps. If not please send the logfiles ! Laurent Le 20/02/2012 11:48, Dipankar Manna a écrit : Dear Sir/Madam, I am very new to this CCP4 program. Usually

Re: [ccp4bb] merge and scale high-res and low-res scans with SCALA

-Modify-Combine MTZ task in ccp4i). Then you can sort (Data Reduction/Utilities/Sort-Modify-Combine MTZ task in ccp4i) your files in a single run in order to get a merged sorted file that you can feed to scala. hope this helps laurent Le 22/02/2011 22:53, Huiying Li a écrit : I have collected two

[ccp4bb] Post-doctoral position in Structural Biology in Lyon, France

*A post-doctoral position *is available immediately in the group of Laurent Terradot at the Institut de Biologie et Chimie des Protéines (IBCP), Lyon, (http://www.ibcp.fr). We are interested in the structure/function of protein complexes involved in /Helicobacter pylori /pathogenesis. This

Re: [ccp4bb] heavy atom derivative choice

luck ! Laurent David Briggs a écrit : Hi Sebastiano, Free Cys' are crying out for Mercury derivatives. Try 2-3 with varying sizes of additional groups - HgCl2, K2HgI4, PCMB, from the "Magic seven" would be a good place to start. Watch out for problems with your low pH, though.

[ccp4bb] CCP4 maps into Turbo frodo

lot for your help Laurent --- Laurent Maveyraud laurent.maveyraud AT ipbs DOT fr Université Paul Sabatier Toulouse III I.P.B.S. UMR 5089 Groupe de Biophysique Structurale

[ccp4bb] coot and stereochemistry

and map terms in the RSR option ? thanks for any ideas or advices laurent --- Laurent Maveyraud laurent.maveyraud AT ipbs DOT fr Université Paul Sabatier Toulouse I

[ccp4bb] problems with polarrfn - CCP4 6.0.2

52 10 1.00E+00 142.00 340 1.00E+00 52 10 1.00E+00 144.00 30 30 1.00E+00 520 1.00E+00 146.00 361 1.00E+00 52 10 1.00E+00 The COEFFS1 file seems to