[ccp4bb] Demonstration for 2nd graders?

2015-01-08 Thread John Lee
Hi everyone, Slightly off topic here but I got myself volunteered by my 2nd grade son to do a show and tell at his class. I have the rock candy experiment ready with some background info on what I do. Can anyone direct me to some resources or your personal demo's that you have done? Thanks a bun

[ccp4bb] fact check about transcription factor binding

2014-11-06 Thread John Lee
I have a structure of a transcription factor in which the recognition helix from two different protomers bind to the same (stretched out) major groove. I was curious whether anyone have seen this kind of motif before - two anti-parallel helices in same major groove. I'm searching the pdb/google bu

Re: [ccp4bb] Yeast membrane protein extraction

2014-10-22 Thread John Lee
Hi Theresa, I totally agree with the bead beater idea. Good reference for recipe (pg.699-701): Overexpression and Purification of Integral Membrane Proteins in Yeast Franklin A. Hays,*,1 Zygy Roe-Zurz,† and Robert M. Stroud -John On Wed, Oct 8, 2014 at 7:25 AM, Theresa Hsu wrote: > Dear

Re: [ccp4bb] Trouble cleaving SUMO tag off of membrane protein

2014-02-17 Thread John Lee
orse in OG), and my solution was to add more Ulp1 and it worked beautifully and I've gotten nice crystals of my protein. -john lee On Sun, Feb 16, 2014 at 9:58 AM, Raji Edayathumangalam wrote: > Hi Everyone, > > After several attempts to cleave the SUMO tag off my membrane

Re: [ccp4bb] Membrane Protein expression and purification

2013-07-12 Thread John Lee
Hi Krish, Seconding Tim's comments, you may need to switch construct or expression host. I've seen many times when a membrane protein seems to be in the yeast membrane, but seems unextractable or most likely, improperly folded. Since you're already working with yeast, I would recommend trying S.ce

Re: [ccp4bb] Membrane Protein Optimisation

2013-05-10 Thread John Lee
Hi Rhys, The bOG concentration of 1.0% is quite acceptable and if your protein is stable and happy in OG, then you're in luck. At 30% PEG 600, I'm not surprised you're seeing the phase separation or detergent 'blob's for lack of a better term. I believe you have the latter, which many of us workin

Re: [ccp4bb] hydrohyapatite column

2010-11-29 Thread John Lee
Hi Sebastiano, Just to add to Dima's response, I've used ceramic hydroxyapatite column and got great results separating 2 very large membrane proteins complexes that eluted together in DEAE/Q and ran in similar size range in SEC. One eluted in 100-200mM KPi and the the other in 300mM+ KPi ~pH 7.4.