[ccp4bb] modelling C-terminal COOH in coot

2012-02-17 Thread Hubing Lou
Dear all, I have a structure solved by molecular replacement. The C-terminus at the end of the chain shows as CO, not COOH. How do I make it into COOH in COOT? I tried to place an O in the relevant position, but seems not working this way. Thanks, Hubing

Re: [ccp4bb] Phaser and Molrep gave different solutions

2011-07-25 Thread Hubing Lou
ll DNA and a much bigger > protein molecule or if the search models and the molecules have identical > sequences. > > To solve this structure you probably have to do Se-labeled protein and SAD > etc. or collect anomalous from metal ions if present. > > Cheers. > > Ray B

Re: [ccp4bb] Phaser and Molrep gave different solutions

2011-07-21 Thread Hubing Lou
space group is P21 and not P2 > or even something else? Did you test other possible space groups? Choosing > the wrong space group could exactly lead to the results you observe. > > Best, > Herman > > > -- > *From:* CCP4 bulletin board [mailt

Re: [ccp4bb] Phaser and Molrep gave different solutions

2011-07-21 Thread Hubing Lou
< 5, have I solved it ? No. > > Hence with a TFZ score of 3.8 you do not have a solution using Phaser. > > Fred. > > Hubing Lou wrote: > >> Dear all, >> >> I am stuck in a molecular replacement case and looking for advices. >> I have been working on a

Re: [ccp4bb] unusual diffraction spots

2010-11-24 Thread Hubing Lou
> > > > Tel. 01235 778057 > > Mob. 07920 138148 > > > > *From:* CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] *On Behalf Of > *Hubing > Lou > *Sent:* 24 November 2010 14:09 > *To:* CCP4BB@JISCMAIL.AC.UK > *Subject:* [ccp4bb] unusual diffraction spot

Re: [ccp4bb] unusual diffraction spots

2010-11-24 Thread Hubing Lou
d Light Source > > Harwell Science and Innovation Campus > > Chilton > > OX11 0DE > > UK > > > > Tel. 01235 778057 > > Mob. 07920 138148 > > > > *From:* CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] *On Behalf Of > *Hubing > Lou > *Se

Re: [ccp4bb] Optimization of needle crystals?

2008-04-16 Thread Hubing Lou
You didn't mention which detergent in the conditions. From the picture it looks like crystals of detergent. -- Hubing Lou Centre for Biomolecular Sciences University of St Andrews North Haugh St Andrews Fife KY16 9ST Scotland Quoting Ngo Duc Tri <[EMAIL PROTECTED]>: > Dear c

Re: [ccp4bb] Progress in membrane protein cryo-protect

2007-02-07 Thread Hubing Lou
First of all, thanks very much for those who replied to my question. For those who do not follow this thread, I was asking a cryo question about membrane protein crystals grown at 4C with 0.05-0.2M AS (ammonium sulfate) and 15-26%PEG400. Some of you suggested directly freeze the crystal in LN fro

[ccp4bb] membrane protein cryo-protect

2007-02-01 Thread Hubing Lou
Dear everybody, I have crystallized a membrane protein at cold room temperature (4°C). The protein was purified in 20mM Tris, pH8 with 1% bOG. The reservoir solution contains 0.1M HEPES pH7.5, 0.05-0.2M (NH4)2SO4 and 15%-26% PEG400. The cryoprotectant was made in such a way that all the other ing